RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 HILS1P60008 231 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 GMFBP60983 142 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 FUT5Q11128 374 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 PRR31Q5SQ13 230 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 DHRS7BQ6IAN0 325 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-213ENST00000492506 NLRC3Q7RTR2 1065 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 AAED1Q7RTV5 226 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 LINC00471Q8N535 108 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 ZNF454Q8N9F8 522 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 OR4F15Q8NGB8 312 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 OIT3Q8WWZ8 545 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 GEMIN6Q8WXD5 167 aaKnown RBP11.29□□□□□ -0.6
HDAC3-213ENST00000492506 GCDHQ92947 438 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-213ENST00000492506 NAA11Q9BSU3 229 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-213ENST00000492506 THAP7Q9BT49 309 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-213ENST00000492506 GPN1Q9HCN4 374 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-213ENST00000492506 B3GAT2Q9NPZ5 323 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 EXOSC3Q9NQT5 275 aaKnown RBP11.29□□□□□ -0.6
HDAC3-213ENST00000492506 UFSP2Q9NUQ7 469 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 COMMD3Q9UBI1 195 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 TMED7Q9Y3B3 224 aa11.29□□□□□ -0.6
HDAC3-213ENST00000492506 CLIC1O00299 241 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 IMPA2O14732 288 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 CFDP00746 253 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-213ENST00000492506 CELA3BP08861 270 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 RAB3BP20337 219 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 NPR2P20594 1047 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 NFYAP23511 347 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-213ENST00000492506 SLC1A3P43003 542 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 CAPZA2P47755 286 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 PITPNBP48739 271 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 MTNR1BP49286 362 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 SMIM11AP58511 58 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 AP3S2P59780 193 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 KCNJ10P78508 379 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 SPIBQ01892 262 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 ACSM1Q08AH1 577 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 TRAM1Q15629 374 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 ZNF124Q15973 351 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 GSG1Q2KHT4 349 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 C12orf73Q69YU5 71 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 C22orf42Q6IC83 251 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 FRRS1Q6ZNA5 592 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 C1orf229Q6ZS94 237 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-213ENST00000492506 HMGN2P46Q86SG4 172 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 PEG10Q86TG7 708 aaKnown RBP11.28□□□□□ -0.6
HDAC3-213ENST00000492506 GLCCI1Q86VQ1 547 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 CDK20Q8IZL9 346 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 OR6V1Q8N148 313 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 TMEM99Q8N816 258 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 FAM169BQ8N8A8 192 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 CNOT9Q92600 299 aaKnown RBP11.28□□□□□ -0.6
HDAC3-213ENST00000492506 TMEM186Q96B77 213 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 MRPS24Q96EL2 167 aaKnown RBP11.28□□□□□ -0.6
HDAC3-213ENST00000492506 DUSP26Q9BV47 211 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 SF3B5Q9BWJ5 86 aaKnown RBP11.28□□□□□ -0.6
HDAC3-213ENST00000492506 OPA3Q9H6K4 179 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 AMBNQ9NP70 447 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 FGF20Q9NP95 211 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-213ENST00000492506 GSN-AS1Q9NRJ2 163 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 NUDT15Q9NV35 164 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 HIF1ANQ9NWT6 349 aa11.28□□□□□ -0.6
HDAC3-213ENST00000492506 PRAMEF27A3QJZ7 478 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 DBX1A6NMT0 343 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 ZNF729A6NN14 1252 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-213ENST00000492506 SNRPGP15A8MWD9 76 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 C5orf58C9J3I9 102 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 PRR23D1E9PI22 279 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-213ENST00000492506 CTDSPLO15194 276 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 GSTZ1O43708 216 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-213ENST00000492506 HPGDSO60760 199 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 AKR7A3O95154 331 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 LPLP06858 475 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 PRR23D2P0DMB1 279 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-213ENST00000492506 SAGP10523 405 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-213ENST00000492506 OSMP13725 252 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 TACR3P29371 465 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 SOAT1P35610 550 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 SELENOPP49908 381 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 P2RY4P51582 365 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 POLR2HP52434 150 aaKnown RBP11.27□□□□□ -0.61
HDAC3-213ENST00000492506 CRISP3P54108 245 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 SELENOWP63302 87 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 BDH1Q02338 343 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 MXD1Q05195 221 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 RAB40BQ12829 278 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 LAPTM4AQ15012 233 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 PTGES3Q15185 160 aaKnown RBP11.27□□□□□ -0.61
HDAC3-213ENST00000492506 PDLIM3Q53GG5 364 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-213ENST00000492506 LBHQ53QV2 105 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-213ENST00000492506 ELFN2Q5R3F8 820 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 C17orf107Q6ZR85 190 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 CLECL1Q8IZS7 167 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 C11orf65Q8NCR3 313 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 PXT1Q8NFP0 134 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 OR52P1PQ8NH57 321 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 CLDND2Q8NHS1 167 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 ZNF418Q8TF45 676 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-213ENST00000492506 GLYATL2Q8WU03 294 aa11.27□□□□□ -0.61
HDAC3-213ENST00000492506 PMM1Q92871 262 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms