RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PP6455Q8WZ26 134 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 PHF7Q9BWX1 381 aaPredicted RBP14.78□□□□□ -0.04
COL7A1-210ENST00000487017 MAGT1Q9H0U3 335 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 V9GYS6 101 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 CTRB1P17538 263 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 GPR12P47775 334 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 CTRB2Q6GPI1 263 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 SPICQ8N5J4 248 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 ZG16BQ96DA0 208 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 SUB1P53999 127 aaKnown RBP eCLIP14.78□□□□□ -0.04
COL7A1-210ENST00000487017 SCAND1P57086 179 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 PRICKLE4Q2TBC4 344 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 ACOT6Q3I5F7 207 aaPredicted RBP14.78□□□□□ -0.04
COL7A1-210ENST00000487017 NECAP1Q8NC96 275 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 HGDQ93099 445 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 OR5V1Q9UGF6 321 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 SCN9AQ15858 1988 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 B4GALT1P15291 398 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 TIAL1Q01085 375 aaKnown RBP eCLIP14.78□□□□□ -0.04
COL7A1-210ENST00000487017 ZNF117Q03924 483 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 BTNL8Q6UX41 500 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 OR2W3Q7Z3T1 314 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 SLC35E1Q96K37 410 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 LRRC61Q9BV99 259 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 OR51I2Q9H344 312 aa14.78□□□□□ -0.04
COL7A1-210ENST00000487017 FUT6P51993 359 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 CLDN15P56746 228 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 RAC1P63000 192 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 ENDOGQ14249 297 aaKnown RBP14.77□□□□□ -0.04
COL7A1-210ENST00000487017 HLXQ14774 488 aaPredicted RBP14.77□□□□□ -0.04
COL7A1-210ENST00000487017 C4orf45Q96LM5 186 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 SIRT3Q9NTG7 399 aaPredicted RBP14.77□□□□□ -0.04
COL7A1-210ENST00000487017 METTL15P1P0C7V9 234 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 ZNF718Q3SXZ3 478 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 ZADH2Q8N4Q0 377 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 UBAC2Q8NBM4 344 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 NMES1Q9C002 83 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 CRLF2Q9HC73 371 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 SPRY1O43609 319 aaPredicted RBP14.77□□□□□ -0.04
COL7A1-210ENST00000487017 UBE2G1P62253 170 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 CDC20BQ86Y33 519 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 CORO2AQ92828 525 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 RPUSD4Q96CM3 377 aaKnown RBP14.77□□□□□ -0.04
COL7A1-210ENST00000487017 DEFB127Q9H1M4 99 aa14.77□□□□□ -0.04
COL7A1-210ENST00000487017 FCER1GP30273 86 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 C17orf47Q8NEP4 570 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 KLF13Q9Y2Y9 288 aaPredicted RBP14.77□□□□□ -0.05
COL7A1-210ENST00000487017 TERTO14746 1132 aaKnown RBP14.77□□□□□ -0.05
COL7A1-210ENST00000487017 GLULP15104 373 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 GLRA1P23415 457 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 ANKRD16Q6P6B7 361 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 MUC20Q8N307 709 aaPredicted RBP14.77□□□□□ -0.05
COL7A1-210ENST00000487017 DUSP18Q8NEJ0 188 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 OR8D4Q8NGM9 314 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 OR13D1Q8NGV5 346 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 TECTBQ96PL2 329 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 C12orf57Q99622 126 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 CABLES2Q9BTV7 478 aa14.77□□□□□ -0.05
COL7A1-210ENST00000487017 RYDENQ9NUL5 291 aaKnown RBP14.77□□□□□ -0.05
COL7A1-210ENST00000487017 A0A1W2PPH5 198 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 CTSVO60911 334 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 CTAG2O75638 210 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 CISD3P0C7P0 127 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 ZNF90Q03938 601 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 CIB3Q96Q77 187 aaPredicted RBP14.76□□□□□ -0.05
COL7A1-210ENST00000487017 SERTM2A0A1B0GWG4 89 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 COX5AP20674 150 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 MVDP53602 400 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 H3F3AP84243 136 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 DEFB108BQ8NET1 73 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 OR4C3Q8NH37 302 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 SPACA9Q96E40 222 aaPredicted RBP14.76□□□□□ -0.05
COL7A1-210ENST00000487017 SMIM7Q9BQ49 75 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 RNASEK-C17orf49H0YIS7 233 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 SFTA3P0C7M3 94 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 ABCD3P28288 659 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 RPS23P62266 143 aaKnown RBP14.76□□□□□ -0.05
COL7A1-210ENST00000487017 CD300CQ08708 224 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 KDF1Q8NAX2 398 aaPredicted RBP14.76□□□□□ -0.05
COL7A1-210ENST00000487017 OR52N4Q8NGI2 321 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 SOX7Q9BT81 388 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 CBR3O75828 277 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 DMRTC1Q5HYR2 192 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 TMEM215Q68D42 235 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 SLC39A7Q92504 469 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 FAM122AQ96E09 287 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 BOD1Q96IK1 185 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 CCDC74BQ96LY2 380 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 FAM103A1Q9BTL3 118 aaKnown RBP14.76□□□□□ -0.05
COL7A1-210ENST00000487017 CPN1P15169 458 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 TSPAN32Q96QS1 320 aa14.76□□□□□ -0.05
COL7A1-210ENST00000487017 RD3LP0DJH9 198 aa14.75□□□□□ -0.05
COL7A1-210ENST00000487017 RAB13P51153 203 aa14.75□□□□□ -0.05
COL7A1-210ENST00000487017 AKR1E2Q96JD6 320 aa14.75□□□□□ -0.05
COL7A1-210ENST00000487017 TTC3P53804 2025 aa14.75□□□□□ -0.05
COL7A1-210ENST00000487017 SRFP11831 508 aa14.75□□□□□ -0.05
COL7A1-210ENST00000487017 MPPED2Q15777 294 aa14.75□□□□□ -0.05
COL7A1-210ENST00000487017 RNF212Q495C1 297 aa14.75□□□□□ -0.05
COL7A1-210ENST00000487017 MENTQ9BUN1 341 aa14.75□□□□□ -0.05
COL7A1-210ENST00000487017 GPR3P46089 330 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms