RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 FSCN3Q9NQT6 498 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 P4HTMQ9NXG6 502 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 DNAJB11Q9UBS4 358 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 ZNF816-ZNF321PA0A0X1KG74 233 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 NPIPB9F8W1W9 429 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 H7C1Q1 480 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 HMGB3O15347 200 aaKnown RBP13.01□□□□□ -0.33
HDAC6-220ENST00000477528 BCL2L11O43521 198 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 SRD5A2P31213 254 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 TSC22D1Q15714 1073 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 C11orf87Q6NUJ2 197 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 ARHGAP5-AS1Q96IT6 56 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 KIRREL1Q96J84 757 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 C2orf50Q96LR7 162 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 RNF212BA8MTL3 300 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 MSTNO14793 375 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 UPK3AO75631 287 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 FUT6P51993 359 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 RPS4XP62701 263 aaKnown RBP13.01□□□□□ -0.33
HDAC6-220ENST00000477528 AADACL3Q5VUY0 350 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 UNQ9370/PRO34162Q6UXP9 181 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 SLC25A45Q8N413 288 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 OR8B12Q8NGG6 310 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 A0A096LPE4 126 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 A0A1W2PPZ6 126 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 C5orf49A4QMS7 147 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 CTXN2P0C2S0 81 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 IRF2P14316 349 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 AVPR2P30518 371 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 LSM6P62312 80 aaKnown RBP13.01□□□□□ -0.33
HDAC6-220ENST00000477528 SLC10A1Q14973 349 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 AANATQ16613 207 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 KRBOX4Q5JUW0 171 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 OR2M3Q8NG83 312 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 TECTBQ96PL2 329 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 RAB9BQ9NP90 201 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 ZNF107Q9UII5 783 aaPredicted RBP13.01□□□□□ -0.33
HDAC6-220ENST00000477528 ZNF391Q9UJN7 358 aa13.01□□□□□ -0.33
HDAC6-220ENST00000477528 OR2M5A3KFT3 312 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 CDC14BO60729 498 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 CNR1P21554 472 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 FPR2P25090 351 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 GSK3AP49840 483 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 ACER2Q5QJU3 275 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 LINC01590Q5TEZ4 76 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 NHLRC1Q6VVB1 395 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 OSR2Q8N2R0 312 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 RELL2Q8NC24 303 aaPredicted RBP13□□□□□ -0.33
HDAC6-220ENST00000477528 SAV1Q9H4B6 383 aaPredicted RBP13□□□□□ -0.33
HDAC6-220ENST00000477528 WDR54Q9H977 334 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 TAF9BQ9HBM6 251 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 RPS10P5Q9NQ39 176 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 FLVCR1Q9Y5Y0 555 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 SHISA3A0PJX4 238 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 AQP7P3A6NL99 342 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 HMSDA8MTL9 139 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 ST8SIA3O43173 380 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 CYC1P08574 325 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 ADRA2AP08913 450 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 S100A2P29034 98 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 GPR157Q5UAW9 335 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 FAM173AQ9BQD7 235 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 CNTNAP3Q9BZ76 1288 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 GHITMQ9H3K2 345 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 ST3GAL6Q9Y274 331 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 OR3A4PP47883 348 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 CLN3Q13286 438 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 ZNF426Q9BUY5 554 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 FRMPD3Q5JV73 1810 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 NXPH2O95156 264 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 TMIGD3P0DMS9 266 aaPredicted RBP13□□□□□ -0.33
HDAC6-220ENST00000477528 DUSP1P28562 367 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 LTBRP36941 435 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 RFC3P40938 356 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 P2RX3P56373 397 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 PPIAP62937 165 aaKnown RBP13□□□□□ -0.33
HDAC6-220ENST00000477528 ROM1Q03395 351 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 PPP1R1AQ13522 171 aa13□□□□□ -0.33
HDAC6-220ENST00000477528 HLXQ14774 488 aaPredicted RBP13□□□□□ -0.33
HDAC6-220ENST00000477528 SMCO3A2RU48 225 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 C4orf47A7E2U8 309 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 NUDT19A8MXV4 375 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 C1orf196B1AJZ1 125 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 IGKV3-11P04433 115 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 MSMO1Q15800 293 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 SLC25A26Q70HW3 274 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 NAA40Q86UY6 237 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 BAP18Q8IXM2 172 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 BATF2Q8N1L9 274 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 MFRPQ9BY79 579 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 TGIF2Q9GZN2 237 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 PIN1P1O15428 100 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 ANGPTL7O43827 346 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 GP1BAP07359 652 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 FOXL2P58012 376 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 SSPNQ14714 243 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 B3GAT1Q9P2W7 334 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 ASCC3Q8N3C0 2202 aaKnown RBP12.99□□□□□ -0.33
HDAC6-220ENST00000477528 CCDC163A0A0D9SF12 145 aa12.99□□□□□ -0.33
HDAC6-220ENST00000477528 SLC33A1O00400 549 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms