RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RASSF4Q9H2L5 321 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 SLC25A19Q9HC21 320 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 SMURF1Q9HCE7 757 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 FAM53CQ9NYF3 392 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 TVP23BQ9NYZ1 205 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 RHBDD3Q9Y3P4 386 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 MDFIC2A0A1B0GVS7 189 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 TMPRSS2O15393 492 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 PLATP00750 562 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 MTNR1AP48039 350 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 HCCSP53701 268 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 APOFQ13790 326 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 SNAPC1Q16533 368 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 SLC35D3Q5M8T2 416 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 PRR31Q5SQ13 230 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 CD276Q5ZPR3 534 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 BRD3OSQ6XYD6 125 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 CSNK2A3Q8NEV1 391 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 OR1M1Q8NGA1 313 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 PCGF1Q9BSM1 259 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 ZNF747Q9BV97 191 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 RGCCQ9H4X1 137 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 PAPOLBQ9NRJ5 636 aaKnown RBP13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 LAMP5Q9UJQ1 280 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 LRP12Q9Y561 859 aa13.05□□□□□ -0.32
CCDC88B-205ENST00000472524 ANXA2P2A6NMY6 339 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 PSMD9O00233 223 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 TNFRSF13BO14836 293 aaPredicted RBP13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 NDUFA2O43678 99 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 LHBP01229 141 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 SFTPBP07988 381 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 MRPL3P09001 348 aaKnown RBP13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 HKR1P10072 659 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 SLC2A5P22732 501 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 PSMA6P60900 246 aaKnown RBP13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 WDR82Q6UXN9 313 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 C9orf139Q6ZV77 190 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 KRT77Q7Z794 578 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 C11orf53Q8IXP5 236 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 FTMTQ8N4E7 242 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 OR8B12Q8NGG6 310 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 MICU1Q9BPX6 476 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 CADM1Q9BY67 442 aaKnown RBP13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 ZMAT3Q9HA38 289 aaKnown RBP13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 PKD1L1Q8TDX9 2849 aa13.04□□□□□ -0.32
CCDC88B-205ENST00000472524 A0A1B0GW55 424 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 ZNF850A8MQ14 1090 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 GSC2O15499 205 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 DUX4L2P0CJ85 424 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 DUX4L3P0CJ86 424 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 DUX4L4P0CJ87 422 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 DUX4L5P0CJ88 424 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 DUX4L6P0CJ89 424 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 DUX4L7P0CJ90 424 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 ALOX5APP20292 161 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 ACKR3P25106 362 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 CFHR2P36980 270 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 DAPP51397 102 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 CRISP1P54107 249 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 GMFBP60983 142 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 ELF3P78545 371 aaPredicted RBP13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 IL5RAQ01344 420 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 FOXL1Q12952 345 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 PRDX4Q13162 271 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 SNCBQ16143 134 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 GPR157Q5UAW9 335 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 TEX36Q5VZQ5 186 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 RUSC1-AS1Q66K80 236 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 DUX4L9Q6RFH8 374 aaPredicted RBP13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 SHISA2Q6UWI4 295 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 KCTD8Q6ZWB6 473 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 DNAJC9Q8WXX5 260 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 ST8SIA4Q92187 359 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 PIGCQ92535 297 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 SLC25A28Q96A46 364 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 ITPKCQ96DU7 683 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 SEH1LQ96EE3 360 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 NRBF2Q96F24 287 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 LYZL4Q96KX0 146 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 RTL8AQ9BWD3 113 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 TTTY10Q9BZA0 68 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 RNPEPL1Q9HAU8 725 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 DUX4Q9UBX2 424 aa13.03□□□□□ -0.32
CCDC88B-205ENST00000472524 CCDC182A6NF36 153 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 ZNF879B4DU55 563 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 M0R129 80 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 DVL1O14640 695 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 CDIPTO14735 213 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 FCN3O75636 299 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 TOX4O94842 621 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 RNASE1P07998 156 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 SLC9A3R2Q15599 337 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 MICBQ29980 383 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 DEFB112Q30KQ8 113 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 WDR38Q5JTN6 314 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 LCN1P1Q5VSP4 162 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 FAHD1Q6P587 224 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 BTN2A1Q7KYR7 527 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 FGFRL1Q8N441 504 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 PNLDC1Q8NA58 520 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms