RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 MEGF10Q96KG7 1140 aa16.79■□□□□ 0.28
COL9A3-204ENST00000463487 MICU1Q9BPX6 476 aa16.79■□□□□ 0.28
COL9A3-204ENST00000463487 COMMD4Q9H0A8 199 aa16.79■□□□□ 0.28
COL9A3-204ENST00000463487 ENPP5Q9UJA9 477 aa16.79■□□□□ 0.28
COL9A3-204ENST00000463487 BLOC1S6Q9UL45 172 aa16.79■□□□□ 0.28
COL9A3-204ENST00000463487 SLC22A13Q9Y226 551 aa16.79■□□□□ 0.28
COL9A3-204ENST00000463487 LRRC30A6NM36 301 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 H7C1Q1 480 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 P2RY10O00398 339 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 MYL12BO14950 172 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 PPIHO43447 177 aaKnown RBP16.78■□□□□ 0.28
COL9A3-204ENST00000463487 CST4P01036 141 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 LIMS3P0CW19 117 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 LIMS4P0CW20 117 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 FOSL1P15407 271 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 NR4A2P43354 598 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 GPR6P46095 362 aaPredicted RBP16.78■□□□□ 0.28
COL9A3-204ENST00000463487 PLPP7Q8NBV4 271 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 OR52N1Q8NH53 320 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 HPS1Q92902 700 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 RTL8AQ9BWD3 113 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 REG4Q9BYZ8 158 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 ISG20L2Q9H9L3 353 aaKnown RBP16.78■□□□□ 0.28
COL9A3-204ENST00000463487 ZNF275Q9NSD4 429 aaPredicted RBP16.78■□□□□ 0.28
COL9A3-204ENST00000463487 PIGLQ9Y2B2 252 aa16.78■□□□□ 0.28
COL9A3-204ENST00000463487 TMEM212A6NML5 194 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 RNF223E7ERA6 249 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 LYNX1G3V0Z9 82 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 H0YL77 283 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 LYNX1P0DP58 116 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 IRF2P14316 349 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 CCL1P22362 96 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 COL8A2P25067 703 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 TGM4P49221 684 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 ETV1P50549 477 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 CDH15P55291 814 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 PRDX4Q13162 271 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 RIN1Q13671 783 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 ALKBH1Q13686 389 aaKnown RBP16.77■□□□□ 0.28
COL9A3-204ENST00000463487 ODF4Q2M2E3 257 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 CCDC58Q4VC31 144 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 LAIR2Q6ISS4 152 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 ZDHHC23Q8IYP9 409 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 C1orf87Q8N0U7 546 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 PRSS35Q8N3Z0 413 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 ZNF676Q8N7Q3 588 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 OR11L1Q8NGX0 322 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 PIGCQ92535 297 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 RAB1CQ92928 201 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 YIPF5Q969M3 257 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 C18orf12Q96KH6 178 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 BPESC1Q9GZL8 116 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 FN3KRPQ9HA64 309 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 TRIM36Q9NQ86 728 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 ERGIC3Q9Y282 383 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 RHBDD3Q9Y3P4 386 aa16.77■□□□□ 0.28
COL9A3-204ENST00000463487 CHD3Q12873 2000 aaKnown RBP16.77■□□□□ 0.27
COL9A3-204ENST00000463487 OTOGQ6ZRI0 2925 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 LOC107986453A0A1B0GWG9 222 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 PTGES3LE9PB15 166 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 RP2O75695 350 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 ISG15P05161 165 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 HEXAP06865 529 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 USF1P22415 310 aaPredicted RBP16.76■□□□□ 0.27
COL9A3-204ENST00000463487 ACKR3P25106 362 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 GATA4P43694 442 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 PPP1R14AQ96A00 147 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 C10orf35Q96D05 121 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 ZNF649Q9BS31 505 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 TMUB1Q9BVT8 246 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 TMEM106BQ9NUM4 274 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 FKBP14Q9NWM8 211 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 FRRS1LQ9P0K9 344 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 V9GYS6 101 aa16.76■□□□□ 0.27
COL9A3-204ENST00000463487 ZNF850A8MQ14 1090 aa16.75■□□□□ 0.27
COL9A3-204ENST00000463487 CDK1P06493 297 aa16.75■□□□□ 0.27
COL9A3-204ENST00000463487 TAS2R43P59537 309 aa16.75■□□□□ 0.27
COL9A3-204ENST00000463487 RBM48Q5RL73 367 aaKnown RBP16.75■□□□□ 0.27
COL9A3-204ENST00000463487 COX4I2Q96KJ9 171 aa16.75■□□□□ 0.27
COL9A3-204ENST00000463487 GCM1Q9NP62 436 aa16.75■□□□□ 0.27
COL9A3-204ENST00000463487 BABAM2Q9NXR7 383 aa16.75■□□□□ 0.27
COL9A3-204ENST00000463487 HHLA2Q9UM44 414 aa16.75■□□□□ 0.27
COL9A3-204ENST00000463487 TRBV2A0A0J9YWF9 115 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 A0A1B0GTI1 187 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 A6NLC8 198 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 TMEM210A6NLX4 147 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 VWC2LB2RUY7 222 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 SERPINA3P01011 423 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 FAHP16930 419 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 KIR3DL2P43630 455 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 CHN2P52757 468 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 LOXL1Q08397 574 aaPredicted RBP16.74■□□□□ 0.27
COL9A3-204ENST00000463487 MAB21L1Q13394 359 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 ZNF181Q2M3W8 571 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 CLVS2Q5SYC1 327 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 OR2G6Q5TZ20 316 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 RPL22L1Q6P5R6 122 aaKnown RBP16.74■□□□□ 0.27
COL9A3-204ENST00000463487 Q6ZSR3 168 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 KCTD8Q6ZWB6 473 aa16.74■□□□□ 0.27
COL9A3-204ENST00000463487 KRT74Q7RTS7 529 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms