RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 SYT9Q86SS6 491 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 NIT1Q86X76 327 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 TMEM99Q8N816 258 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 UBTD2Q8WUN7 234 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 FGGYQ96C11 551 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 ATP5SQ99766 215 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 BOCQ9BWV1 1114 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 SLC23A2Q9UGH3 650 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.04□□□□□ -0.48
USP40-208ENST00000450966 NPIPB15A6NHN6 443 aaPredicted RBP12.04□□□□□ -0.48
USP40-208ENST00000450966 A8MXK9 166 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 CDK5R1Q15078 307 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 FAM78BQ5VT40 261 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 TMEM178AQ8NBL3 297 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 CHST8Q9H2A9 424 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 SLC17A5Q9NRA2 495 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 ZNF816-ZNF321PA0A0X1KG74 233 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 SULT2B1O00204 365 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 GLSO94925 669 aaPredicted RBP12.03□□□□□ -0.48
USP40-208ENST00000450966 CXCL2P19875 107 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 BCL6P41182 706 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 SCAND1P57086 179 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 LHX8Q68G74 356 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 PGBD5Q8N414 524 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 ARRDC1Q8N5I2 433 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 WDR83Q9BRX9 315 aaKnown RBP12.03□□□□□ -0.48
USP40-208ENST00000450966 FCMRO60667 390 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 AESQ08117 197 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 SLC36A2Q495M3 483 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 ZNF385BQ569K4 471 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 LINC01465Q8N7H1 131 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 PLPP7Q8NBV4 271 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 NMES1Q9C002 83 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 OR51B6Q9H340 312 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 ZNF160Q9HCG1 818 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 THSD7AQ9UPZ6 1657 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 HSPB2A8KAH6 182 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 F12P00748 615 aaPredicted RBP12.03□□□□□ -0.48
USP40-208ENST00000450966 ZNF93P35789 620 aaPredicted RBP12.03□□□□□ -0.48
USP40-208ENST00000450966 CTBSQ01459 385 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 HSPB2Q16082 182 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 ACSM5Q6NUN0 579 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 PRICKLE2Q7Z3G6 844 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 VRK2Q86Y07 508 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 ADAMTS17Q8TE56 1095 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 CD79AP11912 226 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 GPM6AP51674 278 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 UBE2G1P62253 170 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 ZPBPQ9BS86 351 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 FOXJ3Q9UPW0 622 aa12.03□□□□□ -0.48
USP40-208ENST00000450966 DNASE2O00115 360 aaPredicted RBP12.02□□□□□ -0.48
USP40-208ENST00000450966 DEDDO75618 318 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 TRGC2P03986 189 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 HIST1H1BP16401 226 aaKnown RBP12.02□□□□□ -0.48
USP40-208ENST00000450966 ZNF77Q15935 545 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 Q1RN00 199 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 PHLDA2Q53GA4 152 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 ZNF595Q8IYB9 648 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 PIK3IP1Q96FE7 263 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 WNT16Q9UBV4 365 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 GOLGA4Q13439 2230 aaKnown RBP12.02□□□□□ -0.48
USP40-208ENST00000450966 MARCH11A6NNE9 402 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 SSSCA1O60232 199 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 DDAH2O95865 285 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 IKZF1Q13422 519 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 IER5LQ5T953 404 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 OR10AD1Q8NGE0 317 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 PBX4Q9BYU1 374 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 LIN7CQ9NUP9 197 aaKnown RBP12.02□□□□□ -0.48
USP40-208ENST00000450966 HAO2Q9NYQ3 351 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 FBXO4Q9UKT5 387 aa12.02□□□□□ -0.48
USP40-208ENST00000450966 ANKRD30BLA7E2S9 258 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 NDUFS6O75380 124 aaKnown RBP12.02□□□□□ -0.49
USP40-208ENST00000450966 DUS4LO95620 317 aaKnown RBP12.02□□□□□ -0.49
USP40-208ENST00000450966 TACR1P25103 407 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 HRH1P35367 487 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 C21orf58P58505 322 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 NUTF2P61970 127 aaKnown RBP12.02□□□□□ -0.49
USP40-208ENST00000450966 CTAG1AP78358 180 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 FAM3AP98173 230 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 HERPUD1Q15011 391 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 ZNF660Q6AZW8 331 aaPredicted RBP12.02□□□□□ -0.49
USP40-208ENST00000450966 STAC2Q6ZMT1 411 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 DPY19L2P2Q6ZN68 376 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 ZADH2Q8N4Q0 377 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 OR51A2Q8NGJ7 313 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 ADGRL4Q9HBW9 690 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 CYR61O00622 381 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 TMIGD3P0DMS9 266 aaPredicted RBP12.02□□□□□ -0.49
USP40-208ENST00000450966 MUC1P15941 1255 aaPredicted RBP12.02□□□□□ -0.49
USP40-208ENST00000450966 VASPP50552 380 aaPredicted RBP12.02□□□□□ -0.49
USP40-208ENST00000450966 RPEL1Q2QD12 228 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 ZNF687Q8N1G0 1237 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 OR52L2PQ8NGH6 319 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 OR52E1Q8NGJ3 308 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 PRSS50Q9UI38 385 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 TJP1Q07157 1748 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 KCNAB3O43448 404 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 FZD6O60353 706 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 POU3F2P20265 443 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms