RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 RPP14O95059 124 aaKnown RBP9.64□□□□□ -0.87
COL28A1-203ENST00000435823 CYB5R3P00387 301 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-203ENST00000435823 IGHV2-5P01817 119 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 GRPP07492 148 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 MSMBP08118 114 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 GABRB1P18505 474 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 HNF1AP20823 631 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 PEX2P28328 305 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 MDH2P40926 338 aaKnown RBP9.64□□□□□ -0.87
COL28A1-203ENST00000435823 MAP2K3P46734 347 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 DVL1P1P54792 670 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-203ENST00000435823 IL5RAQ01344 420 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 MFGE8Q08431 387 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-203ENST00000435823 CHRFAM7AQ494W8 412 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 TTC23Q5W5X9 447 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 PLEKHG7Q6ZR37 379 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 ZNF771Q7L3S4 317 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-203ENST00000435823 SSX6Q7RTT6 188 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 THAP5Q7Z6K1 395 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 LRRC28Q86X40 367 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-203ENST00000435823 RHOXF1Q8NHV9 184 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 MRPL48Q96GC5 212 aaKnown RBP9.64□□□□□ -0.87
COL28A1-203ENST00000435823 LYZL4Q96KX0 146 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 HIST1H2AAQ96QV6 131 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 SIGLEC11Q96RL6 698 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 MYCBPQ99417 103 aaPredicted RBP9.64□□□□□ -0.87
COL28A1-203ENST00000435823 MICU1Q9BPX6 476 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 BEX2Q9BXY8 128 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 SHARPINQ9H0F6 387 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 VCXQ9H320 206 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 LPAR2Q9HBW0 351 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 GPR84Q9NQS5 396 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 CDC42EP3Q9UKI2 254 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 RHBDD3Q9Y3P4 386 aa9.64□□□□□ -0.87
COL28A1-203ENST00000435823 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.64□□□□□ -0.87
COL28A1-203ENST00000435823 FN1P02751 2386 aaKnown RBP9.63□□□□□ -0.87
COL28A1-203ENST00000435823 PPIAL4EA0A075B759 164 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 ZNF816-ZNF321PA0A0X1KG74 233 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 hCG_1807616A0A1W2PRN6 198 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 DAPL1A0PJW8 107 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 ZNF850A8MQ14 1090 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 PPIAL4DF5H284 164 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 FAM20BO75063 409 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 SRSF10O75494 262 aaKnown RBP9.63□□□□□ -0.87
COL28A1-203ENST00000435823 PTBP3O95758 552 aaKnown RBP9.63□□□□□ -0.87
COL28A1-203ENST00000435823 PNPP00491 289 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 CST4P01036 141 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 TTRP02766 147 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 PPIAL4FP0DN26 164 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 DBTP11182 482 aaKnown RBP9.63□□□□□ -0.87
COL28A1-203ENST00000435823 ACKR3P25106 362 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 ZNF91Q05481 1191 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 RIPPLY1Q0D2K3 151 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 HNRNPA0Q13151 305 aaKnown RBP9.63□□□□□ -0.87
COL28A1-203ENST00000435823 PRDX4Q13162 271 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 ZMYND11Q15326 602 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 MPPED2Q15777 294 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 LIPNQ5VXI9 398 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 ELMOD2Q8IZ81 293 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 SETD9Q8NE22 299 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 SEMA6DQ8NFY4 1073 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 OR51E1Q8TCB6 317 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 CYGBQ8WWM9 190 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 PIGCQ92535 297 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 TMEM186Q96B77 213 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 POM121Q96HA1 1249 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 FAM71F1Q96KD3 344 aaPredicted RBP9.63□□□□□ -0.87
COL28A1-203ENST00000435823 RTL8AQ9BWD3 113 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 DCLRE1BQ9H816 532 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 C1orf123Q9NWV4 160 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 RNF7Q9UBF6 113 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 AASSQ9UDR5 926 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 GNG8Q9UK08 70 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 RPL36Q9Y3U8 105 aaKnown RBP9.63□□□□□ -0.87
COL28A1-203ENST00000435823 PPIAL4AQ9Y536 164 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 MALRD1Q5VYJ5 2156 aa9.63□□□□□ -0.87
COL28A1-203ENST00000435823 TRAV20A0A0B4J274 112 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 DLGAP1O14490 977 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 CASQ2O14958 399 aaPredicted RBP9.62□□□□□ -0.87
COL28A1-203ENST00000435823 FOXH1O75593 365 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 DHRS3O75911 302 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 ZNF205O95201 554 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 FSTL3O95633 263 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 FADS2O95864 444 aaKnown RBP9.62□□□□□ -0.87
COL28A1-203ENST00000435823 IGLV3-1P01715 115 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 CPT2P23786 658 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 RBMXP38159 391 aaKnown RBP9.62□□□□□ -0.87
COL28A1-203ENST00000435823 PMELP40967 661 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 ACTA2P62736 377 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 ACTG2P63267 376 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 ELF3P78545 371 aaPredicted RBP9.62□□□□□ -0.87
COL28A1-203ENST00000435823 ZNF85Q03923 595 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 KCNJ8Q15842 424 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 ZNF684Q5T5D7 378 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 ZBTB37Q5TC79 503 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 OGFRL1Q5TC84 451 aaPredicted RBP9.62□□□□□ -0.87
COL28A1-203ENST00000435823 KCTD8Q6ZWB6 473 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 DOK3Q7L591 496 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 KCTD20Q7Z5Y7 419 aa9.62□□□□□ -0.87
COL28A1-203ENST00000435823 ZDHHC23Q8IYP9 409 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms