RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 OGG1O15527 345 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 SSX4O60224 188 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 CST4P01036 141 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 HLA-DPB1P04440 258 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 ISG15P05161 165 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 LYNX1P0DP58 116 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 ATP6V1B1P15313 513 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 CA6P23280 308 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 GTF2A1P52655 376 aaPredicted RBP10.52□□□□□ -0.73
USP40-205ENST00000430158 CCL8P80075 99 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 HNRNPA0Q13151 305 aaKnown RBP10.52□□□□□ -0.73
USP40-205ENST00000430158 MAB21L1Q13394 359 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 RIN1Q13671 783 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 ALKBH1Q13686 389 aaKnown RBP10.52□□□□□ -0.73
USP40-205ENST00000430158 TSTQ16762 297 aaKnown RBP10.52□□□□□ -0.73
USP40-205ENST00000430158 ZMAT1Q5H9K5 638 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 TMEM42Q69YG0 159 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 FAM220AQ7Z4H9 259 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 RDH10Q8IZV5 341 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 ZNF525Q8N782 197 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 NANOGP1Q8N7R0 232 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 OR14K1Q8NGZ2 314 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 UBASH3BQ8TF42 649 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 ELMOD3Q96FG2 381 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 DIRC2Q96SL1 478 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 ITGB1BP2Q9UKP3 347 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 LSM2Q9Y333 95 aaKnown RBP10.52□□□□□ -0.73
USP40-205ENST00000430158 WNK2Q9Y3S1 2297 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 SONP18583 2426 aaKnown RBP10.52□□□□□ -0.73
USP40-205ENST00000430158 DOCK11Q5JSL3 2073 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 MALRD1Q5VYJ5 2156 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 LOC100289279A0A1B0GTE1 492 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 DHRS7CA6NNS2 312 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 F5H5P2 479 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 J3QL48 77 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 GMDSO60547 372 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 DHRS3O75911 302 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 ZFPL1O95159 310 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 MT-ND5P03915 603 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 DAOP14920 347 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 LORP23490 312 aaPredicted RBP10.51□□□□□ -0.73
USP40-205ENST00000430158 GIFP27352 417 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 RBMXP38159 391 aaKnown RBP10.51□□□□□ -0.73
USP40-205ENST00000430158 PMELP40967 661 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 CD200P41217 278 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 CRYBB2P43320 205 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 MRPL28Q13084 256 aaKnown RBP10.51□□□□□ -0.73
USP40-205ENST00000430158 GFOD2Q3B7J2 385 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 RBM48Q5RL73 367 aaKnown RBP10.51□□□□□ -0.73
USP40-205ENST00000430158 ZBTB37Q5TC79 503 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 KLHL36Q8N4N3 616 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 CSNK2A3Q8NEV1 391 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 OR2Z1Q8NG97 314 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 OR10AD1Q8NGE0 317 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 OR10AC1Q8NH08 325 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 C10orf105Q8TEF2 133 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 ITLN1Q8WWA0 313 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 GATAD2BQ8WXI9 593 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 RGP1Q92546 391 aaPredicted RBP10.51□□□□□ -0.73
USP40-205ENST00000430158 MRPL48Q96GC5 212 aaKnown RBP10.51□□□□□ -0.73
USP40-205ENST00000430158 MEGF10Q96KG7 1140 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 MYCBPQ99417 103 aaPredicted RBP10.51□□□□□ -0.73
USP40-205ENST00000430158 SLC22A4Q9H015 551 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 BABAM2Q9NXR7 383 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 SCN3BQ9NY72 215 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 IL19Q9UHD0 177 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 TPRKBQ9Y3C4 175 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 CACNG2Q9Y698 323 aa10.51□□□□□ -0.73
USP40-205ENST00000430158 IGHV4-30-2A0A087WSY4 118 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 LOC107986453A0A1B0GWG9 222 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 LMX1BO60663 402 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 MT-ND2P03891 347 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 MYL12AP19105 171 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 GATA4P43694 442 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 MAP2K3P46734 347 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 GBX2P52951 348 aaPredicted RBP10.5□□□□□ -0.73
USP40-205ENST00000430158 TNFAIP6P98066 277 aaPredicted RBP10.5□□□□□ -0.73
USP40-205ENST00000430158 CDK5R1Q15078 307 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 CLEC12BQ2HXU8 276 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 CCDC58Q4VC31 144 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 DMKNQ6E0U4 476 aaPredicted RBP10.5□□□□□ -0.73
USP40-205ENST00000430158 RPL22L1Q6P5R6 122 aaKnown RBP10.5□□□□□ -0.73
USP40-205ENST00000430158 TMPRSS11AQ6ZMR5 421 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 DOK3Q7L591 496 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 WDR86Q86TI4 376 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 KLBQ86Z14 1044 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 C11orf53Q8IXP5 236 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 STX19Q8N4C7 294 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 CELF2-AS1Q8N7Q2 184 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 HAVCR2Q8TDQ0 301 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 HPSE2Q8WWQ2 592 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 RDH5Q92781 318 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 DVL3Q92997 716 aaPredicted RBP10.5□□□□□ -0.73
USP40-205ENST00000430158 MYDGFQ969H8 173 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 ITPKCQ96DU7 683 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 FAM71F1Q96KD3 344 aaPredicted RBP10.5□□□□□ -0.73
USP40-205ENST00000430158 MYOZ1Q9NP98 299 aaPredicted RBP10.5□□□□□ -0.73
USP40-205ENST00000430158 DLL4Q9NR61 685 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 DCAF16Q9NXF7 216 aa10.5□□□□□ -0.73
USP40-205ENST00000430158 GTF2A1LQ9UNN4 478 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms