RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SCMH1Q96GD3 660 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 MST1RQ04912 1400 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 DRD1P21728 446 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 CALHM1Q8IU99 346 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 NAT8Q9UHE5 227 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 IGSF23A1L1A6 192 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 OR2A25A4D2G3 310 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 RNF224P0DH78 156 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 PPP1CCP36873 323 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 C19orf54Q5BKX5 351 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 EMC4Q5J8M3 183 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF764Q96H86 408 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 TXLNGYQ9BZA5 131 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 CHRNA10Q9GZZ6 450 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 FAM206AQ9NX38 181 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 MRPS2Q9Y399 296 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 PAM16Q9Y3D7 125 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 C19orf57Q0VDD7 668 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 ATP23Q9Y6H3 246 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 SALL3Q9BXA9 1300 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 ARNTLO00327 626 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 SNHG28P0DPA3 235 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 PVRP15151 417 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 NMUP48645 174 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 VMA21Q3ZAQ7 101 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF788Q6ZQV5 615 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 ZDHHC23Q8IYP9 409 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 FAM26EQ8N5C1 309 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 ARFGAP1Q8N6T3 406 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 PCYT2Q99447 389 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 CSNK1G1Q9HCP0 422 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 KIF13BQ9NQT8 1826 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 VGLL2Q8N8G2 317 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 SNX22Q96L94 193 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 CLDN20P56880 219 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 D2HGDHQ8N465 521 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 NAA50Q9GZZ1 169 aaKnown RBP12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 IGLV3-22A0A075B6J6 115 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 XRCC2O43543 280 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 ALDOCP09972 364 aaKnown RBP12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 HES3Q5TGS1 186 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 HHIPQ96QV1 700 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 GABARAPL3Q9BY60 117 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 MYO5AQ9Y4I1 1855 aaKnown RBP12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 MYO7BQ6PIF6 2116 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 MBTPS2O43462 519 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 ECM29Q5VYK3 1845 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 TMEM131LA2VDJ0 1609 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 IFITM10A6NMD0 228 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 FAM72CH0Y354 149 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 EGR3Q06889 387 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 SYPL1Q16563 259 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 FAM72AQ5TYM5 149 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 FAM72DQ6L9T8 149 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 FAM72BQ86X60 149 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 TMEM255BQ8WV15 326 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 PELI1Q96FA3 418 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 SEMG1P04279 462 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 CSN3P07498 182 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 SLC35E2P0CK97 266 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 CYB561P49447 251 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 INHBCP55103 352 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 MOB3BQ86TA1 216 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 NPEPL1Q8NDH3 523 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF480Q8WV37 535 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 SORT1Q99523 831 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 WSB1Q9Y6I7 421 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 ACTL6AO96019 429 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 PRDX4Q13162 271 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 OSTM1Q86WC4 334 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 ARRB2P32121 409 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 ADRA1AP35348 466 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 APCDD1Q8J025 514 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 OR1B1Q8NGR6 318 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 C3P01024 1663 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF541Q9H0D2 1346 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 LAMB4A4D0S4 1761 aa12.12□□□□□ -0.47
CCDC88A-204ENST00000413716 GJB5O95377 273 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 GLI4P10075 376 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 CIRBPQ14011 172 aaKnown RBP12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 JOSD1Q15040 202 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 GDF7Q7Z4P5 450 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 LRRC15Q8TF66 581 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 COL25A1Q9BXS0 654 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 PTGER1P34995 402 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 FOXA1P55317 472 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF260Q3ZCT1 412 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 NEURL3Q96EH8 262 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 OR1L6Q8NGR2 347 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 OR5R1Q8NH85 324 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 APOOQ9BUR5 198 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 FITM1A5D6W6 292 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 COX19Q49B96 90 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 FAM78BQ5VT40 261 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 LINC00299Q6ZSB3 139 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 OR52N4Q8NGI2 321 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 Q9N2K0 584 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 IZUMO4Q1ZYL8 232 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 THYN1Q9P016 225 aa12.11□□□□□ -0.47
CCDC88A-204ENST00000413716 PSG11Q9UQ72 335 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms