RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ZBTB37Q5TC79 503 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 SLC16A12Q6ZSM3 486 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 LILRB1Q8NHL6 650 aaPredicted RBP15.48■□□□□ 0.07
SDC1-203ENST00000403076 RAB2BQ8WUD1 216 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 PP6455Q8WZ26 134 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 KCTD7Q96MP8 289 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 DHRS9Q9BPW9 319 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 PAPOLGQ9BWT3 736 aaKnown RBP15.48■□□□□ 0.07
SDC1-203ENST00000403076 SLITRK2Q9H156 845 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 TCF7L1Q9HCS4 588 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 TAAR3PQ9P1P4 343 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 CEPT1Q9Y6K0 416 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 PLCE1Q9P212 2302 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 ABCA4P78363 2273 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 PIN1P1O15428 100 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 GABARAPO95166 117 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 NRASP01111 189 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 MYL9P24844 172 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 SERPINF1P36955 418 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 VBP1P61758 197 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 PPP3R1P63098 170 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 CLVS2Q5SYC1 327 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 FBXL14Q8N1E6 418 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 PARP16Q8N5Y8 322 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 OR8G5Q8NG78 346 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 OR13C9Q8NGT0 318 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 ZCCHC4Q9H5U6 513 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 RNF167Q9H6Y7 350 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 GPR173Q9NS66 373 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 TAS2R4Q9NYW5 299 aa15.47■□□□□ 0.07
SDC1-203ENST00000403076 PKDREJQ9NTG1 2253 aa15.46■□□□□ 0.07
SDC1-203ENST00000403076 IGLV3-9A0A075B6K5 115 aa15.46■□□□□ 0.07
SDC1-203ENST00000403076 PLSCR5A0PG75 271 aa15.46■□□□□ 0.07
SDC1-203ENST00000403076 ZNF850A8MQ14 1090 aa15.46■□□□□ 0.07
SDC1-203ENST00000403076 NKPD1Q17RQ9 610 aa15.46■□□□□ 0.07
SDC1-203ENST00000403076 MOB3CQ70IA8 216 aa15.46■□□□□ 0.07
SDC1-203ENST00000403076 ZNF420Q8TAQ5 688 aaPredicted RBP15.46■□□□□ 0.07
SDC1-203ENST00000403076 FBXW5Q969U6 566 aa15.46■□□□□ 0.07
SDC1-203ENST00000403076 HIST1H2AAQ96QV6 131 aa15.46■□□□□ 0.07
SDC1-203ENST00000403076 BCL7BQ9BQE9 202 aa15.46■□□□□ 0.07
SDC1-203ENST00000403076 PPIL3Q9H2H8 161 aaKnown RBP15.46■□□□□ 0.07
SDC1-203ENST00000403076 GPR160Q9UJ42 338 aa15.46■□□□□ 0.07
SDC1-203ENST00000403076 HELZ2Q9BYK8 2649 aaKnown RBP15.46■□□□□ 0.06
SDC1-203ENST00000403076 ICE1Q9Y2F5 2266 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 LILRA1O75019 489 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 CST4P01036 141 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 MAS1P04201 325 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 SRMP19623 302 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 RAB3AP20336 220 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 CA6P23280 308 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 COL8A1P27658 744 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 NCS1P62166 190 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 PRDX4Q13162 271 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 CTF1Q16619 201 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 DMRTC1Q5HYR2 192 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 TMEM255AQ5JRV8 349 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 PLCXD3Q63HM9 321 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 OR1M1Q8NGA1 313 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 PIGTQ969N2 578 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 ISOC1Q96CN7 298 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 CHST5Q9GZS9 411 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 RBM38Q9H0Z9 239 aaKnown RBP15.45■□□□□ 0.06
SDC1-203ENST00000403076 SNTG1Q9NSN8 517 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 TMEM100Q9NV29 134 aa15.45■□□□□ 0.06
SDC1-203ENST00000403076 MRPL15Q9P015 296 aaKnown RBP15.45■□□□□ 0.06
SDC1-203ENST00000403076 MYEF2Q9P2K5 600 aaKnown RBP15.45■□□□□ 0.06
SDC1-203ENST00000403076 RSL24D1Q9UHA3 163 aaKnown RBP15.45■□□□□ 0.06
SDC1-203ENST00000403076 ADGRG4Q8IZF6 3080 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 TRAV8-7A0A075B6U6 113 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 A6NHS1 94 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 ANXA2P2A6NMY6 339 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 HS3ST1O14792 307 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 GMDSO60547 372 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 TGFBR1P36897 503 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 UTS2BQ765I0 119 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 ZDHHC23Q8IYP9 409 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 MUC15Q8N387 334 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 OR13G1Q8NGZ3 307 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 NPRL2Q8WTW4 380 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 UBTD1Q9HAC8 227 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 NEK6Q9HC98 313 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 MSL2Q9HCI7 577 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 FAIMQ9NVQ4 179 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 FOXJ3Q9UPW0 622 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 SLC7A11Q9UPY5 501 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 MPC1Q9Y5U8 109 aa15.44■□□□□ 0.06
SDC1-203ENST00000403076 B9A039 149 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 ZNF701M0R085 212 aaPredicted RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 SULT1B1O43704 296 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 ATF1P18846 271 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 FSTP19883 344 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 ALDH3B1P43353 468 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 SERPINB10P48595 397 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 EVX1P49640 407 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 CNN3Q15417 329 aaKnown RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 OR8G1Q15617 311 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 CEP78Q5JTW2 689 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 OR8S1Q8NH09 359 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 DVL3Q92997 716 aaPredicted RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 PSMG3-AS1Q96PY0 264 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms