RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 A0A1W2PPZ6 126 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 DHRS7CA6NNS2 312 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 H3BSH0 61 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 PRRG2O14669 202 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 CTAG2O75638 210 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 IL2RAP01589 272 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 CD79AP11912 226 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 HOXC12P31275 282 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 RBPJQ06330 500 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 KRTAP27-1Q3LI81 207 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 UNQ6494/PRO21346Q6UXR6 183 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 ZNF767PQ75MW2 155 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 MED12LQ86YW9 2145 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 DNAAF1Q8NEP3 725 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 C1orf162Q8NEQ5 155 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 GIMAP1Q8WWP7 306 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 ZCCHC14Q8WYQ9 949 aaKnown RBP15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 FGGYQ96C11 551 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 GPN1Q9HCN4 374 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 TAS2R4Q9NYW5 299 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 NPTNQ9Y639 398 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 A0A1B0GTI1 187 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 TMEM8BA6NDV4 472 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 LCATP04180 440 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 RAB3AP20336 220 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 RCVRNP35243 200 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 POU3F4P49335 361 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 UBE2NP61088 152 aaKnown RBP15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 CD163Q86VB7 1156 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 RADILQ96JH8 1075 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 SCPEP1Q9HB40 452 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 PLSCR4Q9NRQ2 329 aa15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 ZNF107Q9UII5 783 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-203ENST00000389856 LOC390937A0A1W2PQ73 354 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 SNRPGP15A8MWD9 76 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 XRCC2O43543 280 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 DHRS3O75911 302 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 NDUFB6O95139 128 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 ITGA5P08648 1049 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 FAM87AP0C7U9 286 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 TMIGD3P0DMS9 266 aaPredicted RBP15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 HTR2CP28335 458 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 TIMP3P35625 211 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 KIR2DL2P43627 348 aaPredicted RBP15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 RAB1AP62820 205 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 GFOD2Q3B7J2 385 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 C2orf76Q3KRA6 126 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 C1orf100Q5SVJ3 147 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 PLPP7Q8NBV4 271 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 OR11H7Q8NGC8 314 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 OR51D1Q8NGF3 324 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 PP6455Q8WZ26 134 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 BCL2L2Q92843 193 aaPredicted RBP15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 FAM71F1Q96KD3 344 aaPredicted RBP15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 TMEM138Q9NPI0 162 aa15.85■□□□□ 0.13
CCDC88C-203ENST00000389856 CIB4A0PJX0 185 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 FABP7O15540 132 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 IL18BPO95998 194 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 IGLV3-1P01715 115 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 PATE4P0C8F1 98 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 SFTPCP11686 197 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 BDKRB2P30411 391 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 THBS4P35443 961 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 ACTBP60709 375 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 ACTG1P63261 375 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 ST3GAL2Q16842 350 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 RSPO1Q2MKA7 263 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 CDH26Q8IXH8 852 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 SLC7A5P1Q8MH63 180 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 CISD2Q8N5K1 135 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 OR1M1Q8NGA1 313 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 OR1J2Q8NGS2 313 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 SLC25A28Q96A46 364 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 PLSCR3Q9NRY6 295 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 KLK11Q9UBX7 282 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 SCP2D1Q9UJQ7 156 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 ZNF222Q9UK12 451 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 CACNA1GO43497 2377 aa15.84■□□□□ 0.13
CCDC88C-203ENST00000389856 SSNA1O43805 119 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 GMDSO60547 372 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 ZNF780AO75290 641 aaPredicted RBP15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 WISP2O76076 250 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 HLA-HP01893 362 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 SERPINA5P05154 406 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 DBHP09172 617 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 RAB6AP20340 208 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 PRSS3P35030 304 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 APLNRP35414 380 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 P2RY6Q15077 328 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 BEND4Q6ZU67 534 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 SPICQ8N5J4 248 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 Q8NA96 180 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 SORCS2Q96PQ0 1159 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 SLX1AQ9BQ83 275 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 NOX3Q9HBY0 568 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 BOLA1Q9Y3E2 137 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 V9GYS6 101 aa15.83■□□□□ 0.13
CCDC88C-203ENST00000389856 DOCK7Q96N67 2140 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 ANKRD11Q6UB99 2663 aaPredicted RBP15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 ICMTO60725 284 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms