RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 RAB4AP20338 218 aa13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 CTXN1P60606 82 aa13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 GPR18Q14330 331 aa13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 EXOSC7Q15024 291 aaKnown RBP13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 MEP1BQ16820 701 aa13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 LYPD6Q86Y78 171 aa13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 PRR18Q8N4B5 295 aa13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 OR13D1Q8NGV5 346 aa13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 OR8B4Q96RC9 309 aa13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 HIST1H2BLQ99880 126 aa13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 RHBDD3Q9Y3P4 386 aa13.04□□□□□ -0.32
VPS9D1-201ENST00000389386 A0A087WWC5 75 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 TGIF2-C20orf24A0A0A6YYL0 155 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 A0A1B0GW64 132 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 SMCO3A2RU48 225 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 APBB3O95704 486 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 SEC11BP0C7V7 166 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 ZNF888P0CJ79 500 aaPredicted RBP13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 SGCGQ13326 291 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 ITPRIPL2Q3MIP1 535 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 AKR1C8PQ5T2L2 129 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 GGNBP1Q5YKI7 109 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 SUMF2Q8NBJ7 301 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 OTOSQ8NHW6 89 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 RAB39BQ96DA2 213 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 RTBDNQ9BSG5 229 aaPredicted RBP13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 PRO3102Q9H379 93 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 H0Y8X5 98 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 SPARCP09486 303 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 TRGC1P0CF51 173 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 GNB3P16520 340 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 S1PR1P21453 382 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 FGF7P21781 194 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 DHPSP49366 369 aaPredicted RBP13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 SLC35A1P78382 337 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 COTL1Q14019 142 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 JOSD1Q15040 202 aaPredicted RBP13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 OTPQ5XKR4 325 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 OR2L3Q8NG85 312 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 OR2L8Q8NGY9 312 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 FAM46BQ96A09 425 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 SLC25A31Q9H0C2 315 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 NELFAQ9H3P2 528 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 RIMS4Q9H426 269 aaPredicted RBP13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 URGCP-MRPS24S4R325 110 aa13.03□□□□□ -0.32
VPS9D1-201ENST00000389386 H3BQ15 152 aa13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 K7EQS6 105 aa13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 CYTIPO60759 359 aa13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 QDPRP09417 244 aa13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 TAGLN2P37802 199 aaKnown RBP13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 TFF2Q03403 129 aa13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 FAM53BQ14153 422 aa13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 FRZBQ92765 325 aa13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 ERGIC1Q969X5 290 aa13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 HIF3AQ9Y2N7 669 aa13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 MEMO1Q9Y316 297 aa13.02□□□□□ -0.32
VPS9D1-201ENST00000389386 CYB5BO43169 146 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 GMFGO60234 142 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 C1QL1O75973 258 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 TXNDC12O95881 172 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 GZMBP10144 247 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 SUCLG1P53597 346 aaKnown RBP13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 MFGE8Q08431 387 aaPredicted RBP13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 RUNX2Q13950 521 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 AARDQ4LEZ3 155 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 SLC35D2Q76EJ3 337 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 RNF44Q7L0R7 432 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 RTN4RL2Q86UN3 420 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 OR2I1PQ8NGU4 316 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 MFSD8Q8NHS3 518 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 DTD1Q8TEA8 209 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 RARRES2Q99969 163 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 TMEM74BQ9NUR3 256 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 FANCMQ8IYD8 2048 aa13.02□□□□□ -0.33
VPS9D1-201ENST00000389386 IGKV1D-42A0A075B6H8 117 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 CEACAM5P06731 702 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 GABRA4P48169 554 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 CLDN6P56747 220 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 UNC119Q13432 240 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 KIF26BQ2KJY2 2108 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 HIKESHIQ53FT3 197 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 Q7L0L9 218 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 VN1R4Q7Z5H5 301 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 SMRP1Q8NCR6 262 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 DDA1Q9BW61 102 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 TCEAL2Q9H3H9 227 aaPredicted RBP13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 SIRT7Q9NRC8 400 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 EML2O95834 649 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 RPS2P15880 293 aaKnown RBP13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 COL9A1P20849 921 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 GRK6P43250 576 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 GNG10P50151 68 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 ALG10Q5BKT4 473 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 TMEM196Q5HYL7 178 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 SLC22A18Q96BI1 424 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 BSCL2Q96G97 398 aaPredicted RBP13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 PRRX2Q99811 253 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 SMDT1Q9H4I9 107 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 CAPN10Q9HC96 672 aa13.01□□□□□ -0.33
VPS9D1-201ENST00000389386 FGF22Q9HCT0 170 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms