RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TPPPO94811 219 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 ECDO95905 644 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 IGFBP3P17936 291 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 GUCA1AP43080 201 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 DAZAP2Q15038 168 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 C10orf128Q5T292 105 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 SLC25A47Q6Q0C1 308 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 FAM169BQ8N8A8 192 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 OR52I2Q8NH67 350 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 FCAMRQ8WWV6 532 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 GCDHQ92947 438 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 MUCL1Q96DR8 90 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 ZNF486Q96H40 463 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 SEC61A2Q9H9S3 476 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 CRLF2Q9HC73 371 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 GPR35Q9HC97 309 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 RANGRFQ9HD47 186 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 EMC7Q9NPA0 242 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 NUDT15Q9NV35 164 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 TAS2R4Q9NYW5 299 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 RBMX2Q9Y388 322 aaKnown RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 LHFPL6Q9Y693 200 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 GCN1Q92616 2671 aaKnown RBP8.87□□□□□ -0.99
VPS53-202ENST00000389040 LRRK2Q5S007 2527 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 TRAV6A0A075B6T7 132 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 OR5H1A6NKK0 313 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 SLC17A2O00624 439 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 DHFRP00374 187 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 MT-ND4P03905 459 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 COX6B1P14854 86 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 GIFP27352 417 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 HOXC12P31275 282 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 DCTDP32321 178 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 ZNF84P51523 738 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 TAS2R20P59543 309 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 AP3S2P59780 193 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 CD83Q01151 205 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 GUCA2AQ02747 115 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 PLA2G7Q13093 441 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 SNTB2Q13425 540 aaKnown RBP8.87□□□□□ -0.99
VPS53-202ENST00000389040 GABRA6Q16445 453 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 C3orf36Q3SXR2 165 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 TMEM244Q5VVB8 128 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 GLT8D1Q68CQ7 371 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 FAM166AQ6J272 317 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 KLHL24Q6TFL4 600 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 CFAP77Q6ZQR2 320 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 PLPP7Q8NBV4 271 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 OR10S1Q8NGN2 331 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 OR2AJ1Q8NGZ0 328 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 FYTTD1Q96QD9 318 aaKnown RBP8.87□□□□□ -0.99
VPS53-202ENST00000389040 BEX2Q9BXY8 128 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 ACTR6Q9GZN1 396 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 FAM206AQ9NX38 181 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 GDF2Q9UK05 429 aaPredicted RBP8.87□□□□□ -0.99
VPS53-202ENST00000389040 POLR1DQ9Y2S0 133 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 AMDHD2Q9Y303 409 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 KIAA1549Q9HCM3 1950 aa8.87□□□□□ -0.99
VPS53-202ENST00000389040 LOC100289279A0A1B0GTE1 492 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 P2RY10O00398 339 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 DHHO43323 396 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 XRCC3O43542 346 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 DOK2O60496 412 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 ATP6V1G1O75348 118 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 TCRBP04435 133 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 QDPRP09417 244 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 CDAP32320 146 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 POU3F4P49335 361 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 CCR6P51684 374 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 RRAS2P62070 204 aaPredicted RBP8.86□□□□□ -0.99
VPS53-202ENST00000389040 KCNMB1Q16558 191 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 MEX3BQ6ZN04 569 aaKnown RBP8.86□□□□□ -0.99
VPS53-202ENST00000389040 TCTE3Q8IZS6 198 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 OR51D1Q8NGF3 324 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 AKAP1Q92667 903 aaKnown RBP eCLIP8.86□□□□□ -0.99
VPS53-202ENST00000389040 FAM3DQ96BQ1 224 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 CACNG6Q9BXT2 260 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 SLC17A5Q9NRA2 495 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 MCUBQ9NWR8 336 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 DIDO1Q9BTC0 2240 aaKnown RBP8.86□□□□□ -0.99
VPS53-202ENST00000389040 MED12LQ86YW9 2145 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 A0A0A6YYJ9 748 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 MEGF11A6BM72 1044 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 GGT3PA6NGU5 568 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 ZNF878C9JN71 531 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 CTAG2O75638 210 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 LYZL6O75951 148 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 FARS2O95363 451 aaKnown RBP8.86□□□□□ -0.99
VPS53-202ENST00000389040 IGHV3-9P01782 118 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 ACSM4P0C7M7 580 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 HTR2CP28335 458 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 EFNB2P52799 333 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 PSMA6P60900 246 aaKnown RBP8.86□□□□□ -0.99
VPS53-202ENST00000389040 MRPS34P82930 218 aaKnown RBP8.86□□□□□ -0.99
VPS53-202ENST00000389040 CEACAM16Q2WEN9 425 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 C2orf76Q3KRA6 126 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 UTS2BQ765I0 119 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 ELMOD2Q8IZ81 293 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 OR6M1Q8NGM8 313 aa8.86□□□□□ -0.99
VPS53-202ENST00000389040 OR1K1Q8NGR3 316 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms