RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ZNF346Q9UL40 294 aaKnown RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 KBTBD11-OT1A0A1B0GTJ5 212 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM72A0PK05 275 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF727A8MUV8 499 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 GAPDHSO14556 408 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ARPC1BO15143 372 aaKnown RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 FRS3O43559 492 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PPP1R11O60927 126 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 WNT3P56703 355 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 YBEYP58557 167 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ANKRD55Q3KP44 614 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 DNLZQ5SXM8 178 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 S100A7L2Q5SY68 101 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PAQR3Q6TCH7 311 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 KIAA1191Q96A73 305 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 IL17FQ96PD4 163 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 F2RL3Q96RI0 385 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 SYT17Q9BSW7 474 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 SLC25A51Q9H1U9 297 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 CLN8Q9UBY8 286 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TEX264Q9Y6I9 313 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 NUP214P35658 2090 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 MYH13Q9UKX3 1938 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 CAMSAP1Q5T5Y3 1602 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 A0A1B0GVG6 124 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 MFSD2BA6NFX1 497 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PPM1DO15297 605 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 HRASP01112 189 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 SLC5A2P31639 672 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 CLDN18P56856 261 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 DNAJB13P59910 316 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 RAC3P60763 192 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 B4GALNT1Q00973 533 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 HNRNPA1L2Q32P51 320 aaKnown RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 SPINK9Q5DT21 86 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 CGB2Q6NT52 195 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF620Q6ZNG0 422 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 CLDN19Q8N6F1 224 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ZNRF1Q8ND25 227 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 GPR26Q8NDV2 337 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 OR5AN1Q8NGI8 311 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 OR10J6PQ8NGY7 276 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF418Q8TF45 676 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 DUSP19Q8WTR2 217 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 CLEC4CQ8WTT0 213 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 RNF141Q8WVD5 230 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 NKD2Q969F2 451 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM106AQ96A25 262 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 YIPF6Q96EC8 236 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 KLK15Q9H2R5 256 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 GPR173Q9NS66 373 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ZDHHC2Q9UIJ5 367 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 SLC17A4Q9Y2C5 497 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 LSM2Q9Y333 95 aaKnown RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 UBIAD1Q9Y5Z9 338 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TCRBV5S4A2TA0A5A2 114 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 M0R082 166 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 GEMIN2O14893 280 aaKnown RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 RBFOX2O43251 390 aaKnown RBP eCLIP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 SP1P08047 785 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 CYC1P08574 325 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 FUT1P19526 365 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 DCAF7P61962 342 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 LY6EQ16553 131 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF528Q3MIS6 628 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TPGS2Q68CL5 300 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF534Q76KX8 674 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 LYG1Q8N1E2 194 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 OR8B3Q8NGG8 313 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 C10orf82Q8WW14 230 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ADTRPQ96IZ2 230 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 OR8B2Q96RD0 313 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 NAT8Q9UHE5 227 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TRAV41A0A0B4J266 112 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 A0A1W2PPQ1 181 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TNFRSF10AO00220 468 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 WNT10BO00744 389 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TMPRSS2O15393 492 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PRKYO43930 277 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TMPRSS11DO60235 418 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 NUDT1P36639 197 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PCBP4P57723 403 aaKnown RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PRB3Q04118 309 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 EIF4HQ15056 248 aaKnown RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 KIAA1644Q3SXP7 199 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 GTSCR1Q86UQ5 136 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 KLHDC8AQ8IYD2 350 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 KCNRGQ8N5I3 272 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 CHDHQ8NE62 594 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 OR9G4Q8NGQ1 327 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 OR14A16Q8NHC5 309 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 GPR146Q96CH1 333 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TLCD1Q96CP7 247 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 IGSF21Q96ID5 467 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 SLC30A3Q99726 388 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ALKBH7Q9BT30 221 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PLA2G12BQ9BX93 195 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 RBKSQ9H477 322 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 DLL4Q9NR61 685 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM38BQ9NVV0 291 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms