RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DGUOKQ16854 277 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 CDNFQ49AH0 187 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 OR4A47Q6IF82 309 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 OR2AE1Q8NHA4 323 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 OR5B12Q96R08 314 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 TREX2Q9BQ50 279 aaPredicted RBP7.4□□□□□ -1.23
HMGB1-203ENST00000341423 ACPTQ9BZG2 426 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 TINAGL1Q9GZM7 467 aaPredicted RBP7.4□□□□□ -1.23
HMGB1-203ENST00000341423 TXNIPQ9H3M7 391 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 SCPEP1Q9HB40 452 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 SLC6A13Q9NSD5 602 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM106BQ9NUM4 274 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 FAM53CQ9NYF3 392 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 JMJD1CQ15652 2540 aa7.4□□□□□ -1.23
HMGB1-203ENST00000341423 TJP1Q07157 1748 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 TCRBV7S3A2A0A539 114 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF716A6NP11 495 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 CEBPGP53567 150 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 UBE2G2P60604 165 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 MS4A2Q01362 244 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 SBSNQ6UWP8 590 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 COLCA1Q6ZS62 124 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF615Q8N8J6 731 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 OR56B1Q8NGI3 324 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 OR52B4Q8NGK2 314 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 HMGCLL1Q8TB92 370 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF407Q9C0G0 2248 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 ARFGEF1Q9Y6D6 1849 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 ZFP92A6NM28 416 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 CDRT15L2A8MXV6 281 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 UCP2P55851 309 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 IZUMO4Q1ZYL8 232 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 RNASE10Q5GAN6 216 aaKnown RBP7.39□□□□□ -1.23
HMGB1-203ENST00000341423 RNF220Q5VTB9 566 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 CREB3L2Q70SY1 520 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 STX12Q86Y82 276 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 OR2M3Q8NG83 312 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 SDSLQ96GA7 329 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 ADTRPQ96IZ2 230 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 SELENOIQ9C0D9 397 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM30AQ9NV96 361 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 TBC1D24Q9ULP9 559 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 CEPT1Q9Y6K0 416 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 A0A087WUJ7 227 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 SYT5O00445 386 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 GOSR2O14653 212 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 MITFO75030 526 aaPredicted RBP7.39□□□□□ -1.23
HMGB1-203ENST00000341423 ATP1B1P05026 303 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 IGFBP1P08833 259 aaPredicted RBP7.39□□□□□ -1.23
HMGB1-203ENST00000341423 CD80P33681 288 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 SLC6A12P48065 614 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 XIAPP98170 497 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 MESP2Q0VG99 397 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 NEDD8Q15843 81 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 SPRED3Q2MJR0 410 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 YIF1BQ5BJH7 314 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 CROCCP3Q8IVE0 287 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 PHC2Q8IXK0 858 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 OR8J1Q8NGP2 316 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 KCNG3Q8TAE7 436 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 SLAMF6Q96DU3 332 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 ALG14Q96F25 216 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 NMES1Q9C002 83 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 DOCK3Q8IZD9 2030 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 PSMB11A5LHX3 300 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 SDCBPO00560 298 aaPredicted RBP7.39□□□□□ -1.23
HMGB1-203ENST00000341423 MRPS14O60783 128 aaKnown RBP7.39□□□□□ -1.23
HMGB1-203ENST00000341423 SLC22A5O76082 557 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 MT-ND1P03886 318 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 THBS1P07996 1170 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 FAM157CP0CG43 387 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 UBBP0CG47 229 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 LRRC75BQ2VPJ9 315 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 ETFRF1Q6IPR1 90 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 TFAP2EQ6VUC0 442 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 RPS27LQ71UM5 84 aaKnown RBP7.39□□□□□ -1.23
HMGB1-203ENST00000341423 OR8J3Q8NGG0 315 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 OPALINQ96PE5 141 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 GPR35Q9HC97 309 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 RABL2AQ9UBK7 228 aaPredicted RBP7.39□□□□□ -1.23
HMGB1-203ENST00000341423 RABL2BQ9UNT1 228 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 RBMX2Q9Y388 322 aaKnown RBP7.39□□□□□ -1.23
HMGB1-203ENST00000341423 DDX60LQ5H9U9 1706 aaKnown RBP7.39□□□□□ -1.23
HMGB1-203ENST00000341423 LAMB4A4D0S4 1761 aa7.39□□□□□ -1.23
HMGB1-203ENST00000341423 A0A1W2PPV4 95 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 NGFP01138 241 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 HPXP02790 462 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 CELA3BP08861 270 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 OMGP23515 440 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 GPM6AP51674 278 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 TPPP2P59282 170 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 NDUFA5Q16718 116 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.38□□□□□ -1.23
HMGB1-203ENST00000341423 Q6ZRG5 221 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 SPAG16Q8N0X2 631 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 GPR119Q8TDV5 335 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 SECTM1Q8WVN6 248 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 POM121L2Q96KW2 1035 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 TREX1Q9NSU2 369 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms