RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 LOC100289279A0A1B0GTE1 492 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 MEGF11A6BM72 1044 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 EEF1E1-BLOC1S5C9J1V9 151 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 EEF1E1O43324 174 aaKnown RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 MTRF1O75570 445 aaKnown RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 CRHP06850 196 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 HCKP08631 526 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 FAM157BP0CG42 384 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ARSBP15848 533 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 SPNP16150 400 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ZNF12P17014 697 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 CDK2P24941 298 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 APLNRP35414 380 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 THBS4P35443 961 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ZNF93P35789 620 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 ART1P52961 327 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ERVS71-1P61550 626 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 DGCR2P98153 550 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 KLRB1Q12918 225 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 PGAP1Q75T13 922 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 RTN4RL2Q86UN3 420 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 LIX1LQ8IVB5 337 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 GDPD1Q8N9F7 314 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 POC5Q8NA72 575 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 SSC4DQ8WTU2 575 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 CHPT1Q8WUD6 406 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 DVL3Q92997 716 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 FAM46BQ96A09 425 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 SPSB4Q96A44 273 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 CCDC120Q96HB5 630 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 SORCS2Q96PQ0 1159 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ABCG5Q9H222 651 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 METTL17Q9H7H0 456 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 AUNIPQ9H7T9 357 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ZNF629Q9UEG4 869 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 ETV7Q9Y603 341 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 PKD1L2Q7Z442 2459 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 NBASA2RRP1 2371 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 IGKV1-27A0A075B6S5 117 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 A0A1W2PP11 408 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 LDLRAD4O15165 306 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 PLA2G10O15496 165 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 XRCC2O43543 280 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 GMDSO60547 372 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 LILRA1O75019 489 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 PLATP00750 562 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 HLA-DQB1P01920 261 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 CD3GP09693 182 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 OCMP0CE72 109 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 VSIG8P0DPA2 414 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 PRF1P14222 555 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 HOXC12P31275 282 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 MAP2K3P46734 347 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 PTH2RP49190 550 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 RIPPLY1Q0D2K3 151 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 UNC119Q13432 240 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 RIN1Q13671 783 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 OXA1LQ15070 435 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 P2RY6Q15077 328 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 OR8B8Q15620 311 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 KISS1Q15726 138 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 IGFBP7Q16270 282 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TRIM16LQ309B1 348 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 MOGAT2Q3SYC2 334 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 PCSK4Q6UW60 755 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 Q6ZNX1 250 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 BEND4Q6ZU67 534 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 C22orf34Q6ZV56 151 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 BHLHA15Q7RTS1 189 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 C1QL2Q7Z5L3 287 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 DPPA2Q7Z7J5 298 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ANGPTL5Q86XS5 388 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 BHLHE23Q8NDY6 225 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TMEM104Q8NE00 496 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 C1orf162Q8NEQ5 155 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 OR56B2PQ8NGI1 322 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 PP6455Q8WZ26 134 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 AKAP1Q92667 903 aaKnown RBP eCLIP3.57□□□□□ -1.84
MCF2-201ENST00000338585 ITFG2Q969R8 447 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 APOBEC3DQ96AK3 386 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 S100PBPQ96BU1 408 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 HAVCR1Q96D42 359 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 C1orf147Q96MC9 270 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 SFXN3Q9BWM7 321 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ATG5Q9H1Y0 275 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 RGCCQ9H4X1 137 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 SP140LQ9H930 580 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 GPR160Q9UJ42 338 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 MRPS28Q9Y2Q9 187 aaKnown RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 SHANK1Q9Y566 2161 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 COL6A6A6NMZ7 2263 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TRGV8A0A0C4DH27 118 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 FAM230AA0A1W2PPH8 454 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ISPDA4D126 451 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 WIPF3A6NGB9 483 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 OR5H1A6NKK0 313 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ZNF850A8MQ14 1090 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 A8MXE2 369 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 SMPD2O60906 423 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TMEM127O75204 238 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms