RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 A0A0G2JMP0 313 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 A0A1W2PPZ6 126 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 TNFSF11O14788 317 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 ARPC1BO15143 372 aaKnown RBP6.09□□□□□ -1.44
SF3B1-201ENST00000335508 CYB5BO43169 146 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 LY86O95711 162 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 GLAP06280 429 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 GABRB1P18505 474 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 VEGFCP49767 419 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 RPS4XP62701 263 aaKnown RBP6.09□□□□□ -1.44
SF3B1-201ENST00000335508 RAB31Q13636 194 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 GRK1Q15835 563 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 RNF151Q2KHN1 245 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 FAM209AQ5JX71 171 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 IDO2Q6ZQW0 420 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 KCTD9Q7L273 389 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 GDPD3Q7L5L3 318 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 LGI3Q8N145 548 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 OR4M2Q8NGB6 313 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 RHNO1Q9BSD3 238 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 SLIRPQ9GZT3 109 aaKnown RBP6.09□□□□□ -1.44
SF3B1-201ENST00000335508 RBM38Q9H0Z9 239 aaKnown RBP6.09□□□□□ -1.44
SF3B1-201ENST00000335508 AUNIPQ9H7T9 357 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 KCNJ16Q9NPI9 418 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 EHFQ9NZC4 300 aa6.09□□□□□ -1.44
SF3B1-201ENST00000335508 ING1Q9UK53 422 aaPredicted RBP6.09□□□□□ -1.44
SF3B1-201ENST00000335508 TMEM229AB2RXF0 380 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 SNCAP37840 140 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 NOXA1Q86UR1 476 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 BHLHE23Q8NDY6 225 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 PTX4Q96A99 478 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 KCNK17Q96T54 332 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 NOX3Q9HBY0 568 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 SLC7A10Q9NS82 523 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 GSKIPQ9P0R6 139 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 CHCHD2Q9Y6H1 151 aaPredicted RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 FN1P02751 2386 aaKnown RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 SIP14410 1827 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 HPGDSO60760 199 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 FAHP16930 419 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 KIR2DL3P43628 341 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 UBE2MP61081 183 aaKnown RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 OR8G1Q15617 311 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 SMUG1Q53HV7 270 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 VOPP1Q96AW1 172 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 AKIRIN1Q9H9L7 192 aaPredicted RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 BEX1Q9HBH7 125 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 GPR35Q9HC97 309 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 MGAT4CQ9UBM8 478 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 MRM2Q9UI43 246 aaKnown RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 LOC100509620A0A075B734 347 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 MASP2O00187 686 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 PRH1P02810 166 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 NFYAP23511 347 aaPredicted RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 CD34P28906 385 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 RPP30P78346 268 aaKnown RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 TATDN3Q17R31 274 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 SLC25A53Q5H9E4 307 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 FDX2Q6P4F2 183 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 Q6ZNX1 250 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 FBXL14Q8N1E6 418 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 ACBD4Q8NC06 268 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 OR56B2PQ8NGI1 322 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 SCNM1Q9BWG6 230 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 ARL6Q9H0F7 186 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 PCDHGA9Q9Y5G4 932 aaKnown RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 ZFC3H1O60293 1989 aaKnown RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 MEIOCA2RUB1 952 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 HMX3A6NHT5 357 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 TCRBP04435 133 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 GIFP27352 417 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 LSM11P83369 360 aaKnown RBP eCLIP6.08□□□□□ -1.443e-8■■□□□ 12.2
SF3B1-201ENST00000335508 GGTLC2Q14390 218 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 OXA1LQ15070 435 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 C10orf128Q5T292 105 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 WFDC8Q8IUA0 241 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 CA5BP1Q8WTZ4 195 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 ASB10Q8WXI3 467 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 UPRTQ96BW1 309 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 CBY1Q9Y3M2 126 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 A0A0B4J203 849 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 A0A0U1RQV5 110 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 J3QT63 122 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 GDF9O60383 454 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 ATF1P18846 271 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF81P51508 661 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 F2RL1P55085 397 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 SNRPD2P62316 118 aaKnown RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF239Q16600 458 aaKnown RBP6.08□□□□□ -1.44
SF3B1-201ENST00000335508 FBLIM1Q8WUP2 373 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 PLEKHF2Q9H8W4 249 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 TP53TG5Q9Y2B4 290 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 MAB21L2Q9Y586 359 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 A0A1W2PNV4 684 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 XRCC3O43542 346 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 PDCD6O75340 191 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 IFNA5P01569 189 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 FAM219BQ5XKK7 198 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 STEAP3Q658P3 488 aa6.08□□□□□ -1.44
SF3B1-201ENST00000335508 S100A7AQ86SG5 101 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms