RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 HIST1H1BP16401 226 aaKnown RBP12.97□□□□□ -0.33
COL7A1-201ENST00000328333 PITX1P78337 314 aaPredicted RBP12.97□□□□□ -0.33
COL7A1-201ENST00000328333 BTG2P78543 158 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 OR4A47Q6IF82 309 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 OR4A4PQ8NGN8 299 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM204Q9BSN7 226 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 NAT8Q9UHE5 227 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 TBPL2Q6SJ96 375 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 GOT1L1Q8NHS2 421 aaPredicted RBP12.97□□□□□ -0.33
COL7A1-201ENST00000328333 WTIPA6NIX2 430 aaPredicted RBP12.96□□□□□ -0.33
COL7A1-201ENST00000328333 SCO1O75880 301 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 CLDN15P56746 228 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 LAIR1Q6GTX8 287 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 OR10A7Q8NGE5 316 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 ULBP3Q9BZM4 244 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM231Q9H6L2 316 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 M0R2Z0 102 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 GJA4P35212 333 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 HIST3H3Q16695 136 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 LYSMD4Q5XG99 296 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 ZNF547Q8IVP9 402 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 NLGN4XQ8N0W4 816 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 ZPBPQ9BS86 351 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 SEBOXQ9HB31 216 aaPredicted RBP12.96□□□□□ -0.33
COL7A1-201ENST00000328333 SPATA6Q9NWH7 488 aaPredicted RBP12.96□□□□□ -0.33
COL7A1-201ENST00000328333 WNK1Q9H4A3 2382 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 KLRC4-KLRK1H3BQV0 150 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 ISLRO14498 428 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 PGGT1BP53609 377 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 HSF5Q4G112 596 aaPredicted RBP12.96□□□□□ -0.33
COL7A1-201ENST00000328333 CHST14Q8NCH0 376 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 SORBS1Q9BX66 1292 aaKnown RBP12.96□□□□□ -0.33
COL7A1-201ENST00000328333 BCL2L10Q9HD36 194 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 CTSFQ9UBX1 484 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 PLCE1Q9P212 2302 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 CD3DP04234 171 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 COX20Q5RI15 118 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 LIPIQ6XZB0 460 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 LRP10Q7Z4F1 713 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM9BQ9NQ34 198 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 LSM2Q9Y333 95 aaKnown RBP12.96□□□□□ -0.33
COL7A1-201ENST00000328333 EDDM3BP56851 147 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 DOLPP1Q86YN1 238 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 MENTQ9BUN1 341 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 SLIRPQ9GZT3 109 aaKnown RBP12.96□□□□□ -0.33
COL7A1-201ENST00000328333 TXNIPQ9H3M7 391 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 USP3Q9Y6I4 520 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 PIAS3Q9Y6X2 628 aa12.96□□□□□ -0.33
COL7A1-201ENST00000328333 IGKV6D-21A0A0A0MT36 114 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 HCRTO43612 131 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 FGF2P09038 288 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 ASCL1P50553 236 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 FABP5Q01469 135 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 LIPNQ5VXI9 398 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 FOXB2Q5VYV0 432 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 ARIH2OSQ8N7S6 290 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 H7C1C5 153 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 M0R135 149 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 AKR7A2O43488 359 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 WDR1O75083 606 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 ABOP16442 354 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 PPP1CAP62136 330 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 IL13RA2Q14627 380 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 BPIFA4PQ86YQ2 179 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 PLPP6Q8IY26 295 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 LRRC15Q8TF66 581 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 C11orf40Q8WZ69 217 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF799Q96GE5 643 aa12.96□□□□□ -0.34
COL7A1-201ENST00000328333 MEIKINA0A087WXM9 373 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 A0A1B0GV72 72 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 BMPR1BO00238 502 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 BMPR1AP36894 532 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 OR10G3Q8NGC4 313 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 OCEL1Q9H607 264 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 TAAR2Q9P1P5 351 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 HMGN4O00479 90 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 CTNSO60931 367 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 DCAF12Q5T6F0 453 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 HSD11B1LQ7Z5J1 315 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 SLC17A2O00624 439 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 OR3A1P47881 315 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 FAM71E1Q6IPT2 247 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 COL25A1Q9BXS0 654 aaPredicted RBP12.95□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF256Q9Y2P7 627 aaPredicted RBP12.95□□□□□ -0.34
COL7A1-201ENST00000328333 HIST1H1CP16403 213 aaKnown RBP12.95□□□□□ -0.34
COL7A1-201ENST00000328333 HTR1DP28221 377 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 HES1Q14469 280 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 PTDSS2Q9BVG9 487 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 UQCC1Q9NVA1 299 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 DEFB110Q30KQ9 67 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 OR1A1Q9P1Q5 309 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 LNP1A1A4G5 178 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 OR52A4PA6NMU1 304 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 DHRS2Q13268 280 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 MRM1Q6IN84 353 aaKnown RBP12.95□□□□□ -0.34
COL7A1-201ENST00000328333 Q7L0L9 218 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 OCIAD1Q9NX40 245 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF749O43361 778 aa12.95□□□□□ -0.34
COL7A1-201ENST00000328333 MAT1AQ00266 395 aaKnown RBP12.95□□□□□ -0.34
COL7A1-201ENST00000328333 ANKLE1Q8NAG6 615 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms