RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 RPS15AP62244 130 aaKnown RBP2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ACTA2P62736 377 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 RPS21P63220 83 aaKnown RBP2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ACTG2P63267 376 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ACTC1P68032 377 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ACTA1P68133 377 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ADARB1P78563 741 aaKnown RBP2.06□□□□□ -2.08
HMGB1-201ENST00000326004 LCN2P80188 198 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ECH1Q13011 328 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 MADCAM1Q13477 382 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 RCAN2Q14206 197 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 TRAM2Q15035 370 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 SF3A2Q15428 464 aaKnown RBP2.06□□□□□ -2.08
HMGB1-201ENST00000326004 UBE2SQ16763 222 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 RSPO1Q2MKA7 263 aaPredicted RBP2.06□□□□□ -2.08
HMGB1-201ENST00000326004 HSP90B2PQ58FF3 399 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF691Q5VV52 312 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 KHDRBS2Q5VWX1 349 aaKnown RBP2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ASCL4Q6XD76 172 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ZFP2Q6ZN57 461 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 TMEM179Q6ZVK1 233 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 Q8N976 141 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 OR13C9Q8NGT0 318 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 OR5K2Q8NHB8 316 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 NDNFQ8TB73 568 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF502Q8TBZ5 544 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 PIH1D2Q8WWB5 315 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ASZ1Q8WWH4 475 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 TMEM54Q969K7 222 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ECHDC3Q96DC8 303 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 OR5B12Q96R08 314 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ZYG11BQ9C0D3 744 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 PIGUQ9H490 435 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 PATZ1Q9HBE1 687 aaKnown RBP2.06□□□□□ -2.08
HMGB1-201ENST00000326004 SLCO1B3Q9NPD5 702 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ACP6Q9NPH0 428 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ZC4H2Q9NQZ6 224 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 AGPAT4Q9NRZ5 378 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 CCDC59Q9P031 241 aaKnown RBP2.06□□□□□ -2.08
HMGB1-201ENST00000326004 OR12D3Q9UGF7 316 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 LGALS13Q9UHV8 139 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 CD84Q9UIB8 345 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ING4Q9UNL4 249 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 KPTNQ9Y664 436 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 DCHS1Q96JQ0 3298 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 GAKO14976 1311 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 MAP3K19Q56UN5 1328 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ROCK1Q13464 1354 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 CEMIPQ8WUJ3 1361 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 CDH23Q9H251 3354 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ARFGEF2Q9Y6D5 1785 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 ZSWIM8A7E2V4 1837 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 ITGB4P16144 1822 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 ANKRD31Q8N7Z5 1873 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 DOPEY1Q5JWR5 2465 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 TRAV6A0A075B6T7 132 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 GLYATL1P3A0A0U1RQE8 302 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 A0A1B0GW55 424 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 GSTTP1A0A1W2PQM5 241 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 ANGPTL7O43827 346 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 CD5LO43866 347 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 CLDN11O75508 207 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 MED6O75586 246 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF189O75820 626 aaPredicted RBP2.05□□□□□ -2.08
HMGB1-201ENST00000326004 C6orf47O95873 294 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 DUX4L2P0CJ85 424 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 DUX4L3P0CJ86 424 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 DUX4L5P0CJ88 424 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 DUX4L6P0CJ89 424 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 DUX4L7P0CJ90 424 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF250P15622 560 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 PMCHP20382 165 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 RPS12P25398 132 aaKnown RBP2.05□□□□□ -2.08
HMGB1-201ENST00000326004 AK4P27144 223 aaPredicted RBP2.05□□□□□ -2.08
HMGB1-201ENST00000326004 GABRR2P28476 465 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 OR1E1P30953 314 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 TNFSF9P41273 254 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 RORCP51449 518 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 YWHAEP62258 255 aaKnown RBP2.05□□□□□ -2.08
HMGB1-201ENST00000326004 NCF4Q15080 339 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 RPEL1Q2QD12 228 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 PGGHGQ32M88 737 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 C6orf183Q5T699 404 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 ULK3Q6PHR2 472 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 DEGS2Q6QHC5 323 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 DUX4L9Q6RFH8 374 aaPredicted RBP2.05□□□□□ -2.08
HMGB1-201ENST00000326004 IGFL3Q6UXB1 125 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 LINC00173Q6ZV60 143 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 ABHD13Q7L211 337 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 STRADAQ7RTN6 431 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 H1FOOQ8IZA3 346 aaPredicted RBP2.05□□□□□ -2.08
HMGB1-201ENST00000326004 TRAM1L1Q8N609 369 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 GATSQ8NAP1 163 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 OR10G4Q8NGN3 311 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 LRRC20Q8TCA0 184 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 APH1AQ96BI3 265 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 PIK3IP1Q96FE7 263 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 P2RX4Q99571 388 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 TM6SF2Q9BZW4 377 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 UBE2ZQ9H832 354 aaPredicted RBP2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms