RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 GP1BAP07359 652 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 CD37P11049 281 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 IDH3GP51553 393 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-201ENST00000323668 IKZF1Q13422 519 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 SHBQ15464 509 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 ZNF813Q6ZN06 617 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 RPS19BP1Q86WX3 136 aaKnown RBP13.16□□□□□ -0.3
TCOF1-201ENST00000323668 ZNF321PQ8N8H1 164 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 RTN4IP1Q8WWV3 396 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-201ENST00000323668 RNASEK-C17orf49H0YIS7 233 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 CRHP06850 196 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 GLULP15104 373 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 NKX2-1P43699 371 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-201ENST00000323668 STK11Q15831 433 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 OR2G3Q8NGZ4 309 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 OR1L3Q8NH93 324 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 PTPMT1Q8WUK0 201 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-201ENST00000323668 MMP26Q9NRE1 261 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 GPR160Q9UJ42 338 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 MYLKQ15746 1914 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 A0A1W2PQD3 144 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 TMEM218A2RU14 115 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 RER1O15258 196 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 BGLAPP02818 100 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 CBR1P16152 277 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 PIGPP57054 158 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 Q7L0L9 218 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 NIPSNAP3BQ9BS92 247 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 NIT2Q9NQR4 276 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 MCTS1Q9ULC4 181 aaKnown RBP13.16□□□□□ -0.3
TCOF1-201ENST00000323668 FIGNL2A6NMB9 653 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 DHHO43323 396 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 TXNDC12O95881 172 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 RAC2P15153 192 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 C16orf47Q6ZP98 133 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-201ENST00000323668 ARL5BQ96KC2 179 aa13.16□□□□□ -0.3
TCOF1-201ENST00000323668 PRSS44E7EML9 344 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 APLNRP35414 380 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 RAB32Q13637 225 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 KISS1Q15726 138 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 NAA40Q86UY6 237 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 PURGQ9UJV8 347 aaKnown RBP13.15□□□□□ -0.3
TCOF1-201ENST00000323668 UMAD1C9J7I0 102 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 HSPB6O14558 160 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 ADRA2CP18825 462 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 ZNF658BQ4V348 819 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-201ENST00000323668 PRSS54Q6PEW0 395 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 WDSUB1Q8N9V3 476 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 ZNF485Q8NCK3 441 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 OCSTAMPQ9BR26 566 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 NPDC1Q9NQX5 325 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-201ENST00000323668 GLRA1P23415 457 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 LINC01590Q5TEZ4 76 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 FAM221AA4D161 298 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 ADAP1O75689 374 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 CST4P01036 141 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 DPPA2Q7Z7J5 298 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 OR5T1Q8NG75 326 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 MITD1Q8WV92 249 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 NANOS1Q8WY41 292 aaKnown RBP13.15□□□□□ -0.3
TCOF1-201ENST00000323668 FANCFQ9NPI8 374 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 RASL12Q9NYN1 266 aa13.15□□□□□ -0.3
TCOF1-201ENST00000323668 GPR31O00270 319 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 ICAM2P13598 275 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 THBS4P35443 961 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 NHLRC3Q5JS37 347 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 ZNF660Q6AZW8 331 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-201ENST00000323668 RPUSD3Q6P087 351 aaKnown RBP13.14□□□□□ -0.31
TCOF1-201ENST00000323668 OR51F2Q8NH61 342 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 RPS4Y2Q8TD47 263 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 PRRX2Q99811 253 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 OR2A4O95047 310 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 FOLR1P15328 257 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 TAGLN2P37802 199 aaKnown RBP13.14□□□□□ -0.31
TCOF1-201ENST00000323668 PTGFRP43088 359 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 UBE2NP61088 152 aaKnown RBP13.14□□□□□ -0.31
TCOF1-201ENST00000323668 MGAT2Q10469 447 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 SFT2D1Q8WV19 159 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 ZNF845Q96IR2 970 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-201ENST00000323668 OR2A7Q96R45 310 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 AMELYQ99218 206 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 FN3KRPQ9HA64 309 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 STRAPQ9Y3F4 350 aaKnown RBP13.14□□□□□ -0.31
TCOF1-201ENST00000323668 C4orf47A7E2U8 309 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 H2AFB1P0C5Y9 115 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 IL9P15248 144 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 MMP16P51512 607 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 TMEM182Q6ZP80 229 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-201ENST00000323668 OR51B6Q9H340 312 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 ZNF230Q9UIE0 474 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-201ENST00000323668 A0A1W2PPC1 479 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 SMCO3A2RU48 225 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 XRCC2O43543 280 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 GSK3AP49840 483 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 EXT1Q16394 746 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 SYT13Q7L8C5 426 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 OVCH2Q7RTZ1 564 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 SGK3Q96BR1 496 aa13.14□□□□□ -0.31
TCOF1-201ENST00000323668 RBMXL1Q96E39 390 aaKnown RBP13.14□□□□□ -0.31
TCOF1-201ENST00000323668 DNAJB11Q9UBS4 358 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms