RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SSPNQ14714 243 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 LRRC75BQ2VPJ9 315 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF707Q96C28 371 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 LSM2Q9Y333 95 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 CEMIPQ8WUJ3 1361 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 NEXMIFQ5QGS0 1516 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 TRAV12-2A0A075B6T6 113 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 A0A0U1RQV1 116 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 MFSD2BA6NFX1 497 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM233B4DJY2 109 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 TAAR5O14804 337 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC25A27O95847 323 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 P04436 131 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 CCR5P51681 352 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 RIGQ13278 110 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 OR1Q1Q15612 314 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 RTL8BQ17RB0 113 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 NCBP2-AS2Q69YL0 99 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 LAMTOR1Q6IAA8 161 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 SLCO4C1Q6ZQN7 724 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 FAM89BQ8N5H3 189 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 OR5M9Q8NGP3 310 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 ERGIC1Q969X5 290 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM106AQ96A25 262 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 LINC00052Q96N35 136 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 HSPB9Q9BQS6 159 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 SPATA25Q9BR10 227 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 C20orf27Q9GZN8 174 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 ABCC6O95255 1503 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 PPLO60437 1756 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 GSG1L2A8MUP6 293 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF487B1APH4 448 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 NDUFS5O43920 106 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 CFDP00746 253 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 GYPBP06028 91 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 CPOXP36551 454 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 CRKLP46109 303 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 RAB40BQ12829 278 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 RASL11AQ6T310 242 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 CADM4Q8NFZ8 388 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 OR52E1Q8NGJ3 308 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 CYP2W1Q8TAV3 490 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 CMTM7Q96FZ5 175 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 MS4A4AQ96JQ5 239 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF275Q9NSD4 429 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 MBNL3Q9NUK0 354 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 HILPDAQ9Y5L2 63 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 MROH2AA6NES4 1674 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 NID2Q14112 1375 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 SPATA31A6Q5VVP1 1343 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM129A0AVI4 362 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF26P17031 533 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 RPL12P30050 165 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 RBMY1FQ15415 496 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 RRN3P1Q2M238 152 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 SIAH3Q8IW03 269 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 IL22RA1Q8N6P7 574 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 OR51S1Q8NGJ8 323 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 MARCH1Q8TCQ1 289 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 MYADMQ96S97 322 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 DEFB126Q9BYW3 111 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 APOBEC3BQ9UH17 382 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 LMTK2Q8IWU2 1503 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 PSMB1P20618 241 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 DRD3P35462 400 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 CDKN2DP55273 166 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 SELENOTP62341 195 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 HYAL1Q12794 435 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 EMC4Q5J8M3 183 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 PRSS42Q7Z5A4 293 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 BTN2A3PQ96KV6 586 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF391Q9UJN7 358 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 ICAM5Q9UMF0 924 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC25A15Q9Y619 301 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 IGKV3D-20A0A0C4DH25 116 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 F5H6K3 240 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 H3BMM0 161 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 LINC00614P0C842 121 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 RPS26P62854 115 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 KLRC3Q07444 240 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 RCAN2Q14206 197 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 SPANXN1Q5VSR9 72 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 RGS7BPQ6MZT1 257 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 FAM53AQ6NSI3 398 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 C4orf19Q8IY42 314 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 UBE2WQ96B02 151 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 ZBTB45Q96K62 511 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC6A13Q9NSD5 602 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 WBP1LQ9NX94 342 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 CNOT2Q9NZN8 540 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 FBXL17Q9UF56 701 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 MOKQ9UQ07 419 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 KLK4Q9Y5K2 254 aa6.93□□□□□ -1.3
LIMCH1-201ENST00000313860 C1RP00736 705 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 GP1BAP07359 652 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 ZDHHC23Q8IYP9 409 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 BHLHE23Q8NDY6 225 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 OR9G4Q8NGQ1 327 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 OR52P1PQ8NH57 321 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms