RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SNAI3Q3KNW1 292 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 LRRC37A5PQ49AS3 106 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 OR4K15Q8NH41 348 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 RHBDD1Q8TEB9 315 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 ZNF799Q96GE5 643 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 STMND1H3BQB6 276 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 IFNA6P05013 189 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 GMFBP60983 142 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 HIST1H3AP68431 136 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 HIST2H3PS2Q5TEC6 136 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 HIST2H3AQ71DI3 136 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 LYG2Q86SG7 212 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 GGNQ86UU5 652 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 CCDC28AQ8IWP9 274 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 ARMC10Q8N2F6 343 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 ANGPTL6Q8NI99 470 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 CASTOR1Q8WTX7 329 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 ROBO4Q8WZ75 1007 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 PIGTQ969N2 578 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 SGCZQ96LD1 299 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 NUDT16L1Q9BRJ7 211 aaKnown RBP17.6■□□□□ 0.41
VPS53-201ENST00000291074 C1QTNF6Q9BXI9 259 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 MFFQ9GZY8 342 aa17.6■□□□□ 0.41
VPS53-201ENST00000291074 RFPL4AA6NLU0 287 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 B4E171 279 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 RFPL4AL1F8VTS6 287 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 RRASP10301 218 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 AKR1C4P17516 323 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 MPZP25189 248 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 TSPAN7P41732 249 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.59■□□□□ 0.41
VPS53-201ENST00000291074 C20orf196Q8IYI0 205 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 SREK1IP1Q8N9Q2 155 aaPredicted RBP17.59■□□□□ 0.41
VPS53-201ENST00000291074 MARCH1Q8TCQ1 289 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 DEPPQ9NTK1 212 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 PIGLQ9Y2B2 252 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 C9orf170A2RU37 121 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 LRRC3CA6NJW4 275 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 DHRS3O75911 302 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 VAMP1P23763 118 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 SRD5A2P31213 254 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 ZNF84P51523 738 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 AANATQ16613 207 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 WIPI1Q5MNZ9 446 aaPredicted RBP17.59■□□□□ 0.41
VPS53-201ENST00000291074 GSG1LQ6UXU4 331 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 COQ8AQ8NI60 647 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 ALKBH3Q96Q83 286 aaPredicted RBP17.59■□□□□ 0.41
VPS53-201ENST00000291074 ZNF224Q9NZL3 707 aa17.59■□□□□ 0.41
VPS53-201ENST00000291074 CCDC187A0A096LP49 1063 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 CXCL13O43927 109 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 PDGFAP04085 211 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 GSTP1P09211 210 aaKnown RBP17.58■□□□□ 0.41
VPS53-201ENST00000291074 ACP1P24666 158 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 AVPR2P30518 371 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 OTX1P32242 354 aaPredicted RBP17.58■□□□□ 0.41
VPS53-201ENST00000291074 SUCLG1P53597 346 aaKnown RBP17.58■□□□□ 0.41
VPS53-201ENST00000291074 ECH1Q13011 328 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 CLVS2Q5SYC1 327 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 NAXDQ8IW45 347 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 ZDHHC22Q8N966 263 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 OR2AE1Q8NHA4 323 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 PDCD10Q9BUL8 212 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 V9GYS6 101 aa17.58■□□□□ 0.41
VPS53-201ENST00000291074 A0A0U1RQV5 110 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 PINLYPA6NC86 204 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 OR5H14A6NHG9 310 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 MFNGO00587 321 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 TRAPPC6AO75865 159 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 PATE4P0C8F1 98 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 PRF1P14222 555 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 SERPINA2P20848 420 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 PTGFRP43088 359 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 RAC3P60763 192 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 IL13RA1P78552 427 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 OR51T1Q8NGJ9 327 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 CXorf58Q96LI9 332 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 CRLF2Q9HC73 371 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 SPEF1Q9Y4P9 236 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 FLVCR1Q9Y5Y0 555 aa17.58■□□□□ 0.4
VPS53-201ENST00000291074 CDK2AP1O14519 115 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 FCGR2AP12318 317 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 THBS4P35443 961 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 SIGLEC14Q08ET2 396 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 ZMYND11Q15326 602 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 ACER2Q5QJU3 275 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 PNLDC1Q8NA58 520 aaKnown RBP17.57■□□□□ 0.4
VPS53-201ENST00000291074 OR10A2Q9H208 303 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 COQ3Q9NZJ6 369 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 GJE1A6NN92 205 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 FAM25EA8MYX2 175 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 SCO1O75880 301 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 GP1BAP07359 652 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 RPA2P15927 270 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 CARD18P57730 90 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 HGFACQ04756 655 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 ARFRP1Q13795 201 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 C6orf15Q6UXA7 325 aaPredicted RBP17.57■□□□□ 0.4
VPS53-201ENST00000291074 OR56B1Q8NGI3 324 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 MAFIPQ8WZ33 124 aa17.57■□□□□ 0.4
VPS53-201ENST00000291074 EFSO43281 561 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms