RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 TBC1D8O95759 1140 aa11.12□□□□□ -0.63
LINC00339-212ENST00000642072 IGKV5-2P06315 115 aa11.12□□□□□ -0.63
LINC00339-212ENST00000642072 CTSWP56202 376 aa11.12□□□□□ -0.63
LINC00339-212ENST00000642072 PKN2Q16513 984 aaKnown RBP11.12□□□□□ -0.63
LINC00339-212ENST00000642072 DCAF8Q5TAQ9 597 aa11.12□□□□□ -0.63
LINC00339-212ENST00000642072 C8orf58Q8NAV2 365 aa11.12□□□□□ -0.63
LINC00339-212ENST00000642072 TTLL11Q8NHH1 800 aa11.12□□□□□ -0.63
LINC00339-212ENST00000642072 MINPP1Q9UNW1 487 aa11.12□□□□□ -0.63
LINC00339-212ENST00000642072 ELL2O00472 640 aaPredicted RBP11.11□□□□□ -0.63
LINC00339-212ENST00000642072 WDR43Q15061 677 aaKnown RBP eCLIP11.11□□□□□ -0.63
LINC00339-212ENST00000642072 TXNRD3Q86VQ6 643 aa11.11□□□□□ -0.63
LINC00339-212ENST00000642072 ZBED3Q96IU2 234 aaPredicted RBP11.11□□□□□ -0.63
LINC00339-212ENST00000642072 GREM2Q9H772 168 aa11.11□□□□□ -0.63
LINC00339-212ENST00000642072 BSDC1Q9NW68 430 aaPredicted RBP11.11□□□□□ -0.63
LINC00339-212ENST00000642072 GPR25O00155 361 aa11.1□□□□□ -0.63
LINC00339-212ENST00000642072 CCT4P50991 539 aaKnown RBP11.1□□□□□ -0.63
LINC00339-212ENST00000642072 LDLRAD1Q5T700 205 aa11.1□□□□□ -0.63
LINC00339-212ENST00000642072 STRIP1Q5VSL9 837 aa11.1□□□□□ -0.63
LINC00339-212ENST00000642072 CDC5LQ99459 802 aaKnown RBP11.1□□□□□ -0.63
LINC00339-212ENST00000642072 R3HDMLQ9H3Y0 253 aa11.1□□□□□ -0.63
LINC00339-212ENST00000642072 MAP3K2Q9Y2U5 619 aa11.1□□□□□ -0.63
LINC00339-212ENST00000642072 MYO3BQ8WXR4 1341 aa11.09□□□□□ -0.63
LINC00339-212ENST00000642072 SSC5DA1L4H1 1573 aa11.09□□□□□ -0.63
LINC00339-212ENST00000642072 SASH1O94885 1247 aa11.09□□□□□ -0.63
LINC00339-212ENST00000642072 KLRK1P26718 216 aa11.09□□□□□ -0.63
LINC00339-212ENST00000642072 MMP14P50281 582 aa11.09□□□□□ -0.63
LINC00339-212ENST00000642072 GNAI1P63096 354 aa11.09□□□□□ -0.63
LINC00339-212ENST00000642072 PTPN12Q05209 780 aaKnown RBP11.09□□□□□ -0.63
LINC00339-212ENST00000642072 FBXO46Q6PJ61 603 aaPredicted RBP11.09□□□□□ -0.63
LINC00339-212ENST00000642072 COA1Q9GZY4 146 aa11.09□□□□□ -0.63
LINC00339-212ENST00000642072 IRS2Q9Y4H2 1338 aa11.09□□□□□ -0.63
LINC00339-212ENST00000642072 RANBP2P49792 3224 aaKnown RBP11.08□□□□□ -0.64
LINC00339-212ENST00000642072 PI4KAP2A4QPH2 592 aa11.08□□□□□ -0.64
LINC00339-212ENST00000642072 H7C1W4 665 aa11.08□□□□□ -0.64
LINC00339-212ENST00000642072 APAF1O14727 1248 aa11.08□□□□□ -0.64
LINC00339-212ENST00000642072 DDX58O95786 925 aaKnown RBP11.08□□□□□ -0.64
LINC00339-212ENST00000642072 KSR2Q6VAB6 950 aa11.08□□□□□ -0.64
LINC00339-212ENST00000642072 OGFOD1Q8N543 542 aa11.08□□□□□ -0.64
LINC00339-212ENST00000642072 TSPYL6Q8N831 410 aa11.08□□□□□ -0.64
LINC00339-212ENST00000642072 PI4KAP1Q8N8J0 262 aa11.08□□□□□ -0.64
LINC00339-212ENST00000642072 HDAC9Q9UKV0 1011 aa11.08□□□□□ -0.64
LINC00339-212ENST00000642072 LAMB1P07942 1786 aa11.08□□□□□ -0.64
LINC00339-212ENST00000642072 MYH3P11055 1940 aa11.07□□□□□ -0.64
LINC00339-212ENST00000642072 SPEF2Q9C093 1822 aa11.07□□□□□ -0.64
LINC00339-212ENST00000642072 COL1A1P02452 1464 aaPredicted RBP11.07□□□□□ -0.64
LINC00339-212ENST00000642072 NEURL1BA8MQ27 555 aa11.07□□□□□ -0.64
LINC00339-212ENST00000642072 CASP7P55210 303 aa11.07□□□□□ -0.64
LINC00339-212ENST00000642072 SREBF2Q12772 1141 aa11.07□□□□□ -0.64
LINC00339-212ENST00000642072 MKRN3Q13064 507 aaKnown RBP11.07□□□□□ -0.64
LINC00339-212ENST00000642072 DDX10Q13206 875 aaKnown RBP11.07□□□□□ -0.64
LINC00339-212ENST00000642072 CWF19L2Q2TBE0 894 aaKnown RBP11.07□□□□□ -0.64
LINC00339-212ENST00000642072 CCDC30Q5VVM6 783 aa11.07□□□□□ -0.64
LINC00339-212ENST00000642072 SPRYD7Q5W111 196 aa11.07□□□□□ -0.64
LINC00339-212ENST00000642072 LEMD3Q9Y2U8 911 aa11.07□□□□□ -0.64
LINC00339-212ENST00000642072 FKTNO75072 461 aa11.06□□□□□ -0.64
LINC00339-212ENST00000642072 NF2P35240 595 aa11.06□□□□□ -0.64
LINC00339-212ENST00000642072 CALD1Q05682 793 aaKnown RBP11.06□□□□□ -0.64
LINC00339-212ENST00000642072 TTLL12Q14166 644 aaPredicted RBP11.06□□□□□ -0.64
LINC00339-212ENST00000642072 MAP3K11Q16584 847 aa11.06□□□□□ -0.64
LINC00339-212ENST00000642072 APOBEC3FQ8IUX4 373 aaKnown RBP11.06□□□□□ -0.64
LINC00339-212ENST00000642072 CERS5Q8N5B7 392 aa11.06□□□□□ -0.64
LINC00339-212ENST00000642072 PLA2G12BQ9BX93 195 aa11.06□□□□□ -0.64
LINC00339-212ENST00000642072 FZD1Q9UP38 647 aa11.06□□□□□ -0.64
LINC00339-212ENST00000642072 SZT2Q5T011 3432 aa11.06□□□□□ -0.64
LINC00339-212ENST00000642072 ZNF804BA4D1E1 1349 aa11.06□□□□□ -0.64
LINC00339-212ENST00000642072 CSF1RP07333 972 aa11.05□□□□□ -0.64
LINC00339-212ENST00000642072 TTLL5Q6EMB2 1281 aa11.05□□□□□ -0.64
LINC00339-212ENST00000642072 G2E3Q7L622 706 aa11.05□□□□□ -0.64
LINC00339-212ENST00000642072 ARMC9Q7Z3E5 817 aa11.05□□□□□ -0.64
LINC00339-212ENST00000642072 UBE3BQ7Z3V4 1068 aa11.05□□□□□ -0.64
LINC00339-212ENST00000642072 KIAA0825Q8IV33 1275 aa11.05□□□□□ -0.64
LINC00339-212ENST00000642072 DEFB129Q9H1M3 183 aa11.05□□□□□ -0.64
LINC00339-212ENST00000642072 PRKRIP1Q9H875 184 aaPredicted RBP11.05□□□□□ -0.64
LINC00339-212ENST00000642072 CEP290O15078 2479 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 IGF2BP3O00425 579 aaKnown RBP eCLIP11.04□□□□□ -0.64
LINC00339-212ENST00000642072 ALDH1A1P00352 501 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 ITGA6P23229 1130 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 GTF2IP78347 998 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 PRKG1Q13976 671 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 GCKRQ14397 625 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 IFNL1Q8IU54 200 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 MTMR14Q8NCE2 650 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 FBXW7Q969H0 707 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 CLMNQ96JQ2 1002 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 CHMP4AQ9BY43 222 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 ANKRD2Q9GZV1 360 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 ANGEL1Q9UNK9 670 aaKnown RBP11.04□□□□□ -0.64
LINC00339-212ENST00000642072 PCDHAC2Q9Y5I4 1007 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 AOX1Q06278 1338 aa11.04□□□□□ -0.64
LINC00339-212ENST00000642072 KIAA0100Q14667 2235 aaKnown RBP11.04□□□□□ -0.64
LINC00339-212ENST00000642072 MANSC4A6NHS7 340 aaPredicted RBP11.03□□□□□ -0.64
LINC00339-212ENST00000642072 SNAP23O00161 211 aa11.03□□□□□ -0.64
LINC00339-212ENST00000642072 ZBTB48P10074 688 aaPredicted RBP11.03□□□□□ -0.64
LINC00339-212ENST00000642072 IGHMBP2P38935 993 aaKnown RBP11.03□□□□□ -0.64
LINC00339-212ENST00000642072 CHRNDQ07001 517 aa11.03□□□□□ -0.64
LINC00339-212ENST00000642072 NEXNQ0ZGT2 675 aa11.03□□□□□ -0.64
LINC00339-212ENST00000642072 C15orf52Q6ZUT6 534 aaKnown RBP11.03□□□□□ -0.64
LINC00339-212ENST00000642072 OTOP1Q7RTM1 612 aa11.03□□□□□ -0.64
LINC00339-212ENST00000642072 TSR2Q969E8 191 aaKnown RBP11.03□□□□□ -0.64
LINC00339-212ENST00000642072 CD209Q9NNX6 404 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms