RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MIS12Q9H081 205 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 TRIM35Q9UPQ4 493 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 CFAP43Q8NDM7 1665 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 PLCB4Q15147 1175 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 TCEAL9Q9UHQ7 104 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 AKR1B15C9JRZ8 316 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-220ENST00000641603 GRIPAP1Q4V328 841 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 C20orf194Q5TEA3 1177 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 RASEFQ8IZ41 740 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 BSDC1Q9NW68 430 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-220ENST00000641603 ALS2CLQ60I27 953 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 NAA16Q6N069 864 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 SSH1Q8WYL5 1049 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 VIPAS39Q9H9C1 493 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 ZFXP17010 805 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC178Q5BJE1 867 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 RRP36Q96EU6 259 aaKnown RBP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 ESYT1Q9BSJ8 1104 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 KAT6BQ8WYB5 2073 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 STX10O60499 249 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 GIMAP6Q6P9H5 292 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 MLKLQ8NB16 471 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 TMEM87AQ8NBN3 555 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 C3orf20Q8ND61 904 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 MTUS1Q9ULD2 1270 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 ERCC6LQ2NKX8 1250 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 NBPF14Q5TI25 921 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 AOPEPQ8N6M6 819 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 SMC1BQ8NDV3 1235 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 ZNF692Q9BU19 519 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 GNL3LQ9NVN8 582 aaKnown RBP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 CETN3O15182 167 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 SYKP43405 635 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 CETN1Q12798 172 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 RNF41Q9H4P4 317 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 CAPN7Q9Y6W3 813 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 SKIP12755 728 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 ATP5HO75947 161 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 TRIM37O94972 964 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC184Q52MB2 194 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 TRIML1Q8N9V2 468 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 ANTXR1Q9H6X2 564 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 NOP53Q9NZM5 478 aaKnown RBP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 N4BP3O15049 544 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 RNF40O75150 1001 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 KRT18P05783 430 aaKnown RBP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 CTTNBP2NLQ9P2B4 639 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC43Q96MW1 224 aaKnown RBP5.27□□□□□ -1.57
SCN1A-220ENST00000641603 RUNDC3BQ96NL0 473 aa5.27□□□□□ -1.57
SCN1A-220ENST00000641603 TTC36A6NLP5 189 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 RAD51AP2Q09MP3 1159 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 NMIQ13287 307 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 TTC5Q8N0Z6 440 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 TM6SF1Q9BZW5 370 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 DONSONQ9NYP3 566 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 CYP2C19P33261 490 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 MIER3Q7Z3K6 550 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 TEX11Q8IYF3 940 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 TMTC2Q8N394 836 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 OLFM3Q96PB7 478 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 TCOF1Q13428 1488 aaKnown RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 IRX5P78411 483 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 DCTPP1Q9H773 170 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 CC2D2AQ9P2K1 1620 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 GSTTP1A0A1W2PQM5 241 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 AKR1B10O60218 316 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 ECHDC1Q9NTX5 307 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 RGS12O14924 1447 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 ATP2A2P16615 1042 aaKnown RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 PRKAR2BP31323 418 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 SARM1Q6SZW1 724 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 USP26Q9BXU7 913 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 STRN4Q9NRL3 753 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 SCOCQ9UIL1 159 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 TAOK2Q9UL54 1235 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 CNPY2Q9Y2B0 182 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 HMGXB3Q12766 1538 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 CFAP73A6NFT4 308 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 ZEB2O60315 1214 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 ZSCAN20P17040 1043 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 TMPOP42166 694 aaKnown RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 CRYMQ14894 314 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 TAF7Q15545 349 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 C8orf74Q6P047 294 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 FBXW7Q969H0 707 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 IGHDP01880 384 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 HMGB2P26583 209 aaKnown RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 CENPKQ9BS16 269 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 PCF11O94913 1555 aaKnown RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 PSMA7O14818 248 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 SMIM24O75264 130 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 EIF3BP55884 814 aaKnown RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 IQCGQ9H095 443 aaKnown RBP5.26□□□□□ -1.57
SCN1A-220ENST00000641603 DNAJC25Q9H1X3 360 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 HAUS4Q9H6D7 363 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 TMED1Q13445 227 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms