RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 ZFYP08048 801 aaPredicted RBP25.52■■□□□ 1.68
CLN6-224ENST00000638076 DHX32Q7L7V1 743 aaKnown RBP25.52■■□□□ 1.68
CLN6-224ENST00000638076 ANP32BQ92688 251 aaKnown RBP25.52■■□□□ 1.68
CLN6-224ENST00000638076 BRF1Q92994 677 aa25.52■■□□□ 1.68
CLN6-224ENST00000638076 FGD1P98174 961 aa25.52■■□□□ 1.68
CLN6-224ENST00000638076 WASHC4Q2M389 1173 aa25.52■■□□□ 1.68
CLN6-224ENST00000638076 CDC37L1Q7L3B6 337 aa25.52■■□□□ 1.68
CLN6-224ENST00000638076 VGLL2Q8N8G2 317 aa25.52■■□□□ 1.68
CLN6-224ENST00000638076 ABCC12Q96J65 1359 aa25.51■■□□□ 1.67
CLN6-224ENST00000638076 LOC102724428A0A0B4J2F2 783 aa25.51■■□□□ 1.67
CLN6-224ENST00000638076 SIK1P57059 783 aa25.51■■□□□ 1.67
CLN6-224ENST00000638076 RRAGDQ9NQL2 400 aaPredicted RBP25.51■■□□□ 1.67
CLN6-224ENST00000638076 UBE2HP62256 183 aa25.51■■□□□ 1.67
CLN6-224ENST00000638076 CCDC173Q0VFZ6 552 aa25.51■■□□□ 1.67
CLN6-224ENST00000638076 SLIT2O94813 1529 aa25.5■■□□□ 1.67
CLN6-224ENST00000638076 E7EWF7 191 aa25.5■■□□□ 1.67
CLN6-224ENST00000638076 MCAMP43121 646 aa25.5■■□□□ 1.67
CLN6-224ENST00000638076 PDE8BO95263 885 aa25.49■■□□□ 1.67
CLN6-224ENST00000638076 TPRNQ4KMQ1 711 aa25.49■■□□□ 1.67
CLN6-224ENST00000638076 SUSD4Q5VX71 490 aa25.49■■□□□ 1.67
CLN6-224ENST00000638076 CSPP1Q1MSJ5 1256 aa25.49■■□□□ 1.67
CLN6-224ENST00000638076 ITPK1Q13572 414 aa25.48■■□□□ 1.67
CLN6-224ENST00000638076 TTLL5Q6EMB2 1281 aa25.48■■□□□ 1.67
CLN6-224ENST00000638076 FERMT3Q86UX7 667 aa25.48■■□□□ 1.67
CLN6-224ENST00000638076 FAM177BA6PVY3 158 aa25.48■■□□□ 1.67
CLN6-224ENST00000638076 JAK2O60674 1132 aa25.48■■□□□ 1.67
CLN6-224ENST00000638076 EXOSC10Q01780 885 aaKnown RBP25.48■■□□□ 1.67
CLN6-224ENST00000638076 APPBP2Q92624 585 aa25.48■■□□□ 1.67
CLN6-224ENST00000638076 TRIM44Q96DX7 344 aaPredicted RBP25.48■■□□□ 1.67
CLN6-224ENST00000638076 LAMA4Q16363 1823 aa25.47■■□□□ 1.67
CLN6-224ENST00000638076 HCLS1P14317 486 aaPredicted RBP25.47■■□□□ 1.67
CLN6-224ENST00000638076 PPP1R9BQ96SB3 815 aa25.47■■□□□ 1.67
CLN6-224ENST00000638076 PUS7LQ9H0K6 701 aaKnown RBP25.47■■□□□ 1.67
CLN6-224ENST00000638076 PHF14O94880 888 aa25.47■■□□□ 1.67
CLN6-224ENST00000638076 BARGINQ6ZT62 677 aa25.47■■□□□ 1.67
CLN6-224ENST00000638076 AK7Q96M32 723 aa25.47■■□□□ 1.67
CLN6-224ENST00000638076 FOXP2O15409 715 aa25.46■■□□□ 1.67
CLN6-224ENST00000638076 PIP4K2BP78356 416 aa25.46■■□□□ 1.67
CLN6-224ENST00000638076 SCRN1Q12765 414 aa25.46■■□□□ 1.67
CLN6-224ENST00000638076 ZNF512BQ96KM6 892 aaPredicted RBP25.46■■□□□ 1.67
CLN6-224ENST00000638076 CAMTA2O94983 1202 aa25.45■■□□□ 1.66
CLN6-224ENST00000638076 UTP14AQ9BVJ6 771 aaKnown RBP25.45■■□□□ 1.66
CLN6-224ENST00000638076 CTNNA3Q9UI47 895 aa25.45■■□□□ 1.66
CLN6-224ENST00000638076 PFKFB2O60825 505 aa25.45■■□□□ 1.66
CLN6-224ENST00000638076 APOBRQ0VD83 1088 aa25.45■■□□□ 1.66
CLN6-224ENST00000638076 CCDC183Q5T5S1 534 aa25.45■■□□□ 1.66
CLN6-224ENST00000638076 AGXT2Q9BYV1 514 aa25.45■■□□□ 1.66
CLN6-224ENST00000638076 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.45■■□□□ 1.66
CLN6-224ENST00000638076 HELBQ8NG08 1087 aaPredicted RBP25.44■■□□□ 1.66
CLN6-224ENST00000638076 TSPY26PQ9H489 355 aa25.44■■□□□ 1.66
CLN6-224ENST00000638076 MROH5Q6ZUA9 1318 aa25.43■■□□□ 1.66
CLN6-224ENST00000638076 KRT85P78386 507 aa25.43■■□□□ 1.66
CLN6-224ENST00000638076 CCDC102BQ68D86 513 aa25.43■■□□□ 1.66
CLN6-224ENST00000638076 FAM173BQ6P4H8 233 aa25.43■■□□□ 1.66
CLN6-224ENST00000638076 KCNQ2O43526 872 aa25.43■■□□□ 1.66
CLN6-224ENST00000638076 FGAP02671 866 aa25.43■■□□□ 1.66
CLN6-224ENST00000638076 PHKA1P46020 1223 aa25.43■■□□□ 1.66
CLN6-224ENST00000638076 PUM3Q15397 648 aaKnown RBP25.43■■□□□ 1.66
CLN6-224ENST00000638076 IMMTQ16891 758 aaKnown RBP25.43■■□□□ 1.66
CLN6-224ENST00000638076 CHST3Q7LGC8 479 aa25.43■■□□□ 1.66
CLN6-224ENST00000638076 AKAP11Q9UKA4 1901 aa25.43■■□□□ 1.66
CLN6-224ENST00000638076 GPAA1O43292 621 aa25.42■■□□□ 1.66
CLN6-224ENST00000638076 TTF1Q15361 905 aaPredicted RBP25.42■■□□□ 1.66
CLN6-224ENST00000638076 DDX11Q96FC9 970 aa25.42■■□□□ 1.66
CLN6-224ENST00000638076 HAND2P61296 217 aa25.42■■□□□ 1.66
CLN6-224ENST00000638076 PARP10Q53GL7 1025 aa25.42■■□□□ 1.66
CLN6-224ENST00000638076 ZSCAN25Q6NSZ9 544 aa25.42■■□□□ 1.66
CLN6-224ENST00000638076 LPIN2Q92539 896 aa25.42■■□□□ 1.66
CLN6-224ENST00000638076 LRP5O75197 1615 aa25.42■■□□□ 1.66
CLN6-224ENST00000638076 ARID4AP29374 1257 aaPredicted RBP25.41■■□□□ 1.66
CLN6-224ENST00000638076 ADD2P35612 726 aa25.41■■□□□ 1.66
CLN6-224ENST00000638076 RNF214Q8ND24 703 aa25.41■■□□□ 1.66
CLN6-224ENST00000638076 LLPHQ9BRT6 129 aaKnown RBP25.41■■□□□ 1.66
CLN6-224ENST00000638076 FGFR2P21802 821 aa25.41■■□□□ 1.66
CLN6-224ENST00000638076 SLC9C2Q5TAH2 1124 aa25.41■■□□□ 1.66
CLN6-224ENST00000638076 SMARCC2Q8TAQ2 1214 aa25.41■■□□□ 1.66
CLN6-224ENST00000638076 PIH1D3Q9NQM4 214 aaKnown RBP25.41■■□□□ 1.66
CLN6-224ENST00000638076 SEC31BQ9NQW1 1179 aa25.41■■□□□ 1.66
CLN6-224ENST00000638076 NIP7Q9Y221 180 aaKnown RBP eCLIP25.41■■□□□ 1.66
CLN6-224ENST00000638076 NWD2Q9ULI1 1742 aa25.41■■□□□ 1.66
CLN6-224ENST00000638076 MPHOSPH8Q99549 860 aa25.4■■□□□ 1.66
CLN6-224ENST00000638076 MYH14Q7Z406 1995 aaKnown RBP25.4■■□□□ 1.66
CLN6-224ENST00000638076 RREB1Q92766 1687 aa25.4■■□□□ 1.66
CLN6-224ENST00000638076 TTC6Q86TZ1 520 aa25.4■■□□□ 1.66
CLN6-224ENST00000638076 FAM184AQ8NB25 1140 aa25.4■■□□□ 1.66
CLN6-224ENST00000638076 SMARCC1Q92922 1105 aaPredicted RBP25.4■■□□□ 1.66
CLN6-224ENST00000638076 MYH7P12883 1935 aa25.39■■□□□ 1.66
CLN6-224ENST00000638076 IDH1O75874 414 aaKnown RBP25.39■■□□□ 1.66
CLN6-224ENST00000638076 UQCRFS1P1P0C7P4 283 aa25.39■■□□□ 1.66
CLN6-224ENST00000638076 NSUN7Q8NE18 718 aaKnown RBP25.39■■□□□ 1.66
CLN6-224ENST00000638076 TOM1O60784 492 aa25.38■■□□□ 1.65
CLN6-224ENST00000638076 CCT2P78371 535 aaKnown RBP25.38■■□□□ 1.65
CLN6-224ENST00000638076 NAP1L2Q9ULW6 460 aaPredicted RBP25.38■■□□□ 1.65
CLN6-224ENST00000638076 ESPNB1AK53 854 aa25.38■■□□□ 1.65
CLN6-224ENST00000638076 NTSR2O95665 410 aa25.38■■□□□ 1.65
CLN6-224ENST00000638076 H3BQV1 296 aa25.37■■□□□ 1.65
CLN6-224ENST00000638076 LETM1O95202 739 aaPredicted RBP25.37■■□□□ 1.65
CLN6-224ENST00000638076 CTDNEP1O95476 244 aa25.37■■□□□ 1.65
CLN6-224ENST00000638076 FAM98CQ17RN3 349 aaKnown RBP25.37■■□□□ 1.65
CLN6-224ENST00000638076 CCDC152Q4G0S7 254 aa25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms