RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 LAMB1P07942 1786 aa21.3■■□□□ 1
CLN3-264ENST00000637985 XDHP47989 1333 aa21.29■■□□□ 1
CLN3-264ENST00000637985 ZBTB48P10074 688 aaPredicted RBP21.29■■□□□ 1
CLN3-264ENST00000637985 SLC10A4Q96EP9 437 aa21.29■■□□□ 1
CLN3-264ENST00000637985 ZNF333Q96JL9 665 aa21.29■■□□□ 1
CLN3-264ENST00000637985 TMEM106CQ9BVX2 250 aa21.29■■□□□ 1
CLN3-264ENST00000637985 MXD3Q9BW11 206 aa21.29■■□□□ 1
CLN3-264ENST00000637985 EFCC1Q9HA90 598 aa21.29■■□□□ 1
CLN3-264ENST00000637985 MAPK8IP3Q9UPT6 1336 aa21.29■■□□□ 1
CLN3-264ENST00000637985 ZNF646O15015 1829 aaPredicted RBP21.28■■□□□ 1
CLN3-264ENST00000637985 H0YGN5 161 aa21.28■■□□□ 1
CLN3-264ENST00000637985 ATP2B4P23634 1241 aa21.28■■□□□ 1
CLN3-264ENST00000637985 CAP1Q01518 475 aa21.28■■□□□ 1
CLN3-264ENST00000637985 MAP3K11Q16584 847 aa21.28■■□□□ 1
CLN3-264ENST00000637985 APOBEC3FQ8IUX4 373 aaKnown RBP21.28■■□□□ 1
CLN3-264ENST00000637985 RANBP2P49792 3224 aaKnown RBP21.28■■□□□ 1
CLN3-264ENST00000637985 SASH1O94885 1247 aa21.27■■□□□ 1
CLN3-264ENST00000637985 MMP14P50281 582 aa21.27■■□□□ 1
CLN3-264ENST00000637985 CRHR2Q13324 411 aa21.27■■□□□ 1
CLN3-264ENST00000637985 KRT24Q2M2I5 525 aa21.27■■□□□ 1
CLN3-264ENST00000637985 ZBTB38Q8NAP3 1195 aaPredicted RBP21.27■■□□□ 1
CLN3-264ENST00000637985 WNK4Q96J92 1243 aa21.27■■□□□ 1
CLN3-264ENST00000637985 PNNQ9H307 717 aaKnown RBP21.27■■□□□ 1
CLN3-264ENST00000637985 FZD1Q9UP38 647 aa21.27■■□□□ 1
CLN3-264ENST00000637985 MYO3BQ8WXR4 1341 aa21.27■□□□□ 0.99
CLN3-264ENST00000637985 A0A0C4DFX4 3053 aa21.26■□□□□ 0.99
CLN3-264ENST00000637985 WTIPA6NIX2 430 aaPredicted RBP21.26■□□□□ 0.99
CLN3-264ENST00000637985 HSP90B1P14625 803 aaKnown RBP21.25■□□□□ 0.99
CLN3-264ENST00000637985 RIPK4P57078 832 aa21.25■□□□□ 0.99
CLN3-264ENST00000637985 SP3Q02447 781 aa21.25■□□□□ 0.99
CLN3-264ENST00000637985 CCDC152Q4G0S7 254 aa21.25■□□□□ 0.99
CLN3-264ENST00000637985 STRIP1Q5VSL9 837 aa21.25■□□□□ 0.99
CLN3-264ENST00000637985 ZBED3Q96IU2 234 aaPredicted RBP21.25■□□□□ 0.99
CLN3-264ENST00000637985 CLMNQ96JQ2 1002 aa21.25■□□□□ 0.99
CLN3-264ENST00000637985 MED23Q9ULK4 1368 aa21.24■□□□□ 0.99
CLN3-264ENST00000637985 UNCXA6NJT0 531 aa21.23■□□□□ 0.99
CLN3-264ENST00000637985 OTUD7BQ6GQQ9 843 aa21.23■□□□□ 0.99
CLN3-264ENST00000637985 DBF4Q9UBU7 674 aaPredicted RBP21.23■□□□□ 0.99
CLN3-264ENST00000637985 COL1A1P02452 1464 aaPredicted RBP21.23■□□□□ 0.99
CLN3-264ENST00000637985 RALBP1Q15311 655 aa21.22■□□□□ 0.99
CLN3-264ENST00000637985 HDGFL1Q5TGJ6 251 aa21.22■□□□□ 0.99
CLN3-264ENST00000637985 NBPF11Q86T75 865 aa21.22■□□□□ 0.99
CLN3-264ENST00000637985 ANKRD18AQ8IVF6 992 aa21.22■□□□□ 0.99
CLN3-264ENST00000637985 SLC17A8Q8NDX2 589 aa21.22■□□□□ 0.99
CLN3-264ENST00000637985 PTPN18Q99952 460 aa21.22■□□□□ 0.99
CLN3-264ENST00000637985 DEFB129Q9H1M3 183 aa21.22■□□□□ 0.99
CLN3-264ENST00000637985 COL6A3P12111 3177 aa21.21■□□□□ 0.99
CLN3-264ENST00000637985 CHL1O00533 1208 aa21.21■□□□□ 0.99
CLN3-264ENST00000637985 PDE8AO60658 829 aa21.21■□□□□ 0.99
CLN3-264ENST00000637985 CHRDL2Q6WN34 429 aa21.21■□□□□ 0.99
CLN3-264ENST00000637985 CCDC85AQ96PX6 553 aaPredicted RBP21.21■□□□□ 0.99
CLN3-264ENST00000637985 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.21■□□□□ 0.99
CLN3-264ENST00000637985 SSC5DA1L4H1 1573 aa21.21■□□□□ 0.99
CLN3-264ENST00000637985 TESPA1A2RU30 521 aaPredicted RBP21.2■□□□□ 0.98
CLN3-264ENST00000637985 PPP1R12BO60237 982 aaPredicted RBP21.2■□□□□ 0.98
CLN3-264ENST00000637985 GJA5P36382 358 aa21.2■□□□□ 0.98
CLN3-264ENST00000637985 SLC4A8Q2Y0W8 1093 aa21.2■□□□□ 0.98
CLN3-264ENST00000637985 SLC9C1Q4G0N8 1177 aa21.2■□□□□ 0.98
CLN3-264ENST00000637985 FBXW7Q969H0 707 aa21.2■□□□□ 0.98
CLN3-264ENST00000637985 COA1Q9GZY4 146 aa21.2■□□□□ 0.98
CLN3-264ENST00000637985 HYPKQ9NX55 129 aa21.2■□□□□ 0.98
CLN3-264ENST00000637985 RBM27Q9P2N5 1060 aaKnown RBP21.2■□□□□ 0.98
CLN3-264ENST00000637985 HOXB7P09629 217 aa21.19■□□□□ 0.98
CLN3-264ENST00000637985 KIAA0825Q8IV33 1275 aa21.19■□□□□ 0.98
CLN3-264ENST00000637985 PTCH2Q9Y6C5 1203 aa21.19■□□□□ 0.98
CLN3-264ENST00000637985 PCCAP05165 728 aaPredicted RBP21.18■□□□□ 0.98
CLN3-264ENST00000637985 LMOD3Q0VAK6 560 aa21.18■□□□□ 0.98
CLN3-264ENST00000637985 MINPP1Q9UNW1 487 aa21.18■□□□□ 0.98
CLN3-264ENST00000637985 CUL9Q8IWT3 2517 aa21.18■□□□□ 0.98
CLN3-264ENST00000637985 TMPOP42166 694 aaKnown RBP21.17■□□□□ 0.98
CLN3-264ENST00000637985 DDX10Q13206 875 aaKnown RBP21.17■□□□□ 0.98
CLN3-264ENST00000637985 ARHGEF6Q15052 776 aa21.17■□□□□ 0.98
CLN3-264ENST00000637985 TTLL5Q6EMB2 1281 aa21.17■□□□□ 0.98
CLN3-264ENST00000637985 TXNRD3Q86VQ6 643 aa21.17■□□□□ 0.98
CLN3-264ENST00000637985 PPP2R3BQ9Y5P8 575 aa21.17■□□□□ 0.98
CLN3-264ENST00000637985 CCT4P50991 539 aaKnown RBP21.16■□□□□ 0.98
CLN3-264ENST00000637985 RIC3Q7Z5B4 369 aa21.16■□□□□ 0.98
CLN3-264ENST00000637985 CCDC191Q8NCU4 936 aa21.16■□□□□ 0.98
CLN3-264ENST00000637985 CDC5LQ99459 802 aaKnown RBP21.16■□□□□ 0.98
CLN3-264ENST00000637985 BSDC1Q9NW68 430 aaPredicted RBP21.16■□□□□ 0.98
CLN3-264ENST00000637985 SUPT20HL1Q3ZLR7 823 aa21.15■□□□□ 0.98
CLN3-264ENST00000637985 JARID2Q92833 1246 aaPredicted RBP21.15■□□□□ 0.98
CLN3-264ENST00000637985 USP2O75604 605 aaPredicted RBP21.14■□□□□ 0.97
CLN3-264ENST00000637985 PRO3102Q9H379 93 aa21.14■□□□□ 0.97
CLN3-264ENST00000637985 MYCP01106 439 aaPredicted RBP21.13■□□□□ 0.97
CLN3-264ENST00000637985 IREB2P48200 963 aaKnown RBP21.13■□□□□ 0.97
CLN3-264ENST00000637985 DLGAP5Q15398 846 aa21.13■□□□□ 0.97
CLN3-264ENST00000637985 ANKRD13AQ8IZ07 590 aa21.13■□□□□ 0.97
CLN3-264ENST00000637985 MTMR14Q8NCE2 650 aa21.13■□□□□ 0.97
CLN3-264ENST00000637985 MS4A4AQ96JQ5 239 aa21.13■□□□□ 0.97
CLN3-264ENST00000637985 MYD88Q99836 296 aa21.13■□□□□ 0.97
CLN3-264ENST00000637985 CWC25Q9NXE8 425 aaPredicted RBP21.13■□□□□ 0.97
CLN3-264ENST00000637985 ZNF804BA4D1E1 1349 aa21.12■□□□□ 0.97
CLN3-264ENST00000637985 GTF2IP78347 998 aa21.12■□□□□ 0.97
CLN3-264ENST00000637985 GOLGA2Q08379 1002 aa21.12■□□□□ 0.97
CLN3-264ENST00000637985 NBPF12Q5TAG4 269 aaPredicted RBP21.12■□□□□ 0.97
CLN3-264ENST00000637985 LEMD3Q9Y2U8 911 aa21.12■□□□□ 0.97
CLN3-264ENST00000637985 ECM29Q5VYK3 1845 aa21.11■□□□□ 0.97
CLN3-264ENST00000637985 MYBBP1AQ9BQG0 1328 aaKnown RBP21.11■□□□□ 0.97
CLN3-264ENST00000637985 SH3TC2Q8TF17 1288 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms