RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TADA3O75528 432 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 PSMD7P51665 324 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 SH3BGRP55822 239 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-216ENST00000637968 PPFIA1Q13136 1202 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 IQCB1Q15051 598 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 TSGA10IPQ3SY00 556 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 WDR78Q5VTH9 848 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 ANO2Q9NQ90 1003 aa6.53□□□□□ -1.36
SCN1A-216ENST00000637968 MYO1FO00160 1098 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 STX6O43752 255 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 GET4Q7L5D6 327 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-216ENST00000637968 FBXW7Q969H0 707 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 LZTS2Q9BRK4 669 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 VCXQ9H320 206 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 PAPOLBQ9NRJ5 636 aaKnown RBP6.52□□□□□ -1.37
SCN1A-216ENST00000637968 UTP6Q9NYH9 597 aaKnown RBP6.52□□□□□ -1.37
SCN1A-216ENST00000637968 USP27XA6NNY8 438 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 E2F6O75461 281 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 NBPF7P0C2Y1 421 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-216ENST00000637968 CCDC178Q5BJE1 867 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 DDX46Q7L014 1031 aaKnown RBP6.52□□□□□ -1.37
SCN1A-216ENST00000637968 DDX12PQ92771 950 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 SYTL4Q96C24 671 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-216ENST00000637968 TRAIPQ9BWF2 469 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 USP16Q9Y5T5 823 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 POGZQ7Z3K3 1410 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 THOC2Q8NI27 1593 aaKnown RBP6.52□□□□□ -1.37
SCN1A-216ENST00000637968 APBB1O00213 710 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 ZEB2O60315 1214 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 ATP2C2O75185 946 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 RTN3O95197 1032 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-216ENST00000637968 PPP2R1AP30153 589 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 SPATA32Q96LK8 384 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 TMOD4Q9NZQ9 345 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 SAMM50Q9Y512 469 aa6.52□□□□□ -1.37
SCN1A-216ENST00000637968 FCHSD2O94868 740 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 RHOXF2BP0C7M4 288 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 TRIM21P19474 475 aaKnown RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 PDCP20941 246 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 CD151P48509 253 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 RAB27AP51159 221 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 TUBB2AQ13885 445 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 MYBPC2Q14324 1141 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 SPECC1Q5M775 1068 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 C16orf87Q6PH81 154 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 SYCP3Q8IZU3 236 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 KIRREL3Q8IZU9 778 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 CAGE1Q8TC20 777 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 RHOXF2Q9BQY4 288 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 TUBB2BQ9BVA1 445 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 FUT8Q9BYC5 575 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 SCAND2PQ9GZW5 306 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 VCX3BQ9H321 246 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 VCX3AQ9NNX9 186 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 IPO5O00410 1097 aaKnown RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 FMNL1O95466 1100 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 PIP4K2BP78356 416 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 STIM1Q13586 685 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 SLC5A9Q2M3M2 681 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 GIGYF2Q6Y7W6 1299 aaKnown RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 NCAPG2Q86XI2 1143 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 CXorf38Q8TB03 319 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 CCHCR1Q8TD31 782 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 ARHGEF1Q92888 912 aaKnown RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 PUF60Q9UHX1 559 aaKnown RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 BLOC1S6Q9UL45 172 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 GPRASP1Q5JY77 1395 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 ABCA5Q8WWZ7 1642 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 MEFVO15553 781 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 ROR2Q01974 943 aaKnown RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 Q4G0T1 1027 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 KCNB2Q92953 911 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 BORCS6Q96GS4 357 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 TPCN1Q9ULQ1 816 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 AKAP2Q9Y2D5 859 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 EVC2Q86UK5 1308 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 ARHGAP31Q2M1Z3 1444 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 FGD6Q6ZV73 1430 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 H3BQF6 201 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 SERPINC1P01008 464 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 POLE2P56282 527 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 CASP8Q14790 479 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 HDGFL2Q7Z4V5 671 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 SRCIN1Q9C0H9 1055 aa6.51□□□□□ -1.37
SCN1A-216ENST00000637968 RRP7AQ9Y3A4 280 aaKnown RBP6.51□□□□□ -1.37
SCN1A-216ENST00000637968 EME2A4GXA9 379 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-216ENST00000637968 RASSF10A6NK89 507 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 SMAPO00193 183 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 SYT1P21579 422 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 PCK1P35558 622 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 SMTNP53814 917 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 THEMIS2Q5TEJ8 643 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 HOOK3Q86VS8 718 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 PLEKHG4BQ96PX9 1271 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 SDF4Q9BRK5 362 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 USP26Q9BXU7 913 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 AATFQ9NY61 560 aaKnown RBP eCLIP6.5□□□□□ -1.37
SCN1A-216ENST00000637968 UBAP1Q9NZ09 502 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 TIAM1Q13009 1591 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 KIF21AQ7Z4S6 1674 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms