RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 TTC41PQ6P2S7 1318 aa25.21■■□□□ 1.63
CLN3-245ENST00000636172 C21orf2O43822 256 aa25.2■■□□□ 1.62
CLN3-245ENST00000636172 UFL1O94874 794 aa25.2■■□□□ 1.62
CLN3-245ENST00000636172 ATP2B4P23634 1241 aa25.2■■□□□ 1.62
CLN3-245ENST00000636172 KLRK1P26718 216 aa25.2■■□□□ 1.62
CLN3-245ENST00000636172 DALRD3Q5D0E6 543 aaKnown RBP25.2■■□□□ 1.62
CLN3-245ENST00000636172 PI4K2BQ8TCG2 481 aa25.2■■□□□ 1.62
CLN3-245ENST00000636172 GGA1Q9UJY5 639 aa25.2■■□□□ 1.62
CLN3-245ENST00000636172 WWC3Q9ULE0 1092 aa25.2■■□□□ 1.62
CLN3-245ENST00000636172 MPNDQ8N594 471 aa25.19■■□□□ 1.62
CLN3-245ENST00000636172 TBC1D16Q8TBP0 767 aa25.19■■□□□ 1.62
CLN3-245ENST00000636172 POLLQ9UGP5 575 aa25.19■■□□□ 1.62
CLN3-245ENST00000636172 IRS2Q9Y4H2 1338 aa25.19■■□□□ 1.62
CLN3-245ENST00000636172 GORABQ5T7V8 394 aa25.18■■□□□ 1.62
CLN3-245ENST00000636172 CC2D2BQ6DHV5 1058 aa25.18■■□□□ 1.62
CLN3-245ENST00000636172 DPP8Q6V1X1 898 aaPredicted RBP25.17■■□□□ 1.62
CLN3-245ENST00000636172 GPR101Q96P66 508 aaPredicted RBP25.17■■□□□ 1.62
CLN3-245ENST00000636172 TTC22Q5TAA0 569 aa25.17■■□□□ 1.62
CLN3-245ENST00000636172 SYT17Q9BSW7 474 aa25.17■■□□□ 1.62
CLN3-245ENST00000636172 ATP5JP18859 108 aa25.16■■□□□ 1.62
CLN3-245ENST00000636172 PHKA1P46020 1223 aa25.16■■□□□ 1.62
CLN3-245ENST00000636172 CCDC158Q5M9N0 1113 aa25.16■■□□□ 1.62
CLN3-245ENST00000636172 CCDC102BQ68D86 513 aa25.16■■□□□ 1.62
CLN3-245ENST00000636172 C15orf52Q6ZUT6 534 aaKnown RBP25.16■■□□□ 1.62
CLN3-245ENST00000636172 TXNRD3Q86VQ6 643 aa25.16■■□□□ 1.62
CLN3-245ENST00000636172 ARFGEF1Q9Y6D6 1849 aa25.15■■□□□ 1.62
CLN3-245ENST00000636172 C6orf229H3BNL8 230 aa25.15■■□□□ 1.62
CLN3-245ENST00000636172 ERC2O15083 957 aa25.15■■□□□ 1.62
CLN3-245ENST00000636172 GLRX3O76003 335 aaKnown RBP25.15■■□□□ 1.62
CLN3-245ENST00000636172 GYG1P46976 350 aa25.15■■□□□ 1.62
CLN3-245ENST00000636172 BCAMP50895 628 aa25.15■■□□□ 1.62
CLN3-245ENST00000636172 CCDC93Q567U6 631 aa25.15■■□□□ 1.62
CLN3-245ENST00000636172 MED23Q9ULK4 1368 aa25.14■■□□□ 1.62
CLN3-245ENST00000636172 GSPT1P15170 499 aaKnown RBP25.14■■□□□ 1.62
CLN3-245ENST00000636172 TTC39AQ5SRH9 613 aa25.14■■□□□ 1.62
CLN3-245ENST00000636172 FAM84BQ96KN1 310 aaPredicted RBP25.14■■□□□ 1.62
CLN3-245ENST00000636172 GRIPAP1Q4V328 841 aa25.13■■□□□ 1.61
CLN3-245ENST00000636172 SOGA3Q5TF21 947 aa25.13■■□□□ 1.61
CLN3-245ENST00000636172 FBXO33Q7Z6M2 555 aa25.13■■□□□ 1.61
CLN3-245ENST00000636172 RTFDC1Q9BY42 306 aaPredicted RBP25.13■■□□□ 1.61
CLN3-245ENST00000636172 BCS1LQ9Y276 419 aa25.13■■□□□ 1.61
CLN3-245ENST00000636172 CAVIN4Q5BKX8 364 aa25.12■■□□□ 1.61
CLN3-245ENST00000636172 RTKN2Q8IZC4 609 aa25.12■■□□□ 1.61
CLN3-245ENST00000636172 ZNF512BQ96KM6 892 aaPredicted RBP25.12■■□□□ 1.61
CLN3-245ENST00000636172 BOLA2Q9H3K6 86 aa25.12■■□□□ 1.61
CLN3-245ENST00000636172 AKAP11Q9UKA4 1901 aa25.12■■□□□ 1.61
CLN3-245ENST00000636172 ARID4AP29374 1257 aaPredicted RBP25.12■■□□□ 1.61
CLN3-245ENST00000636172 SCARF1Q14162 830 aa25.12■■□□□ 1.61
CLN3-245ENST00000636172 BMP2KLQ5H9B9 411 aa25.12■■□□□ 1.61
CLN3-245ENST00000636172 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.12■■□□□ 1.61
CLN3-245ENST00000636172 FER1L6Q2WGJ9 1857 aa25.11■■□□□ 1.61
CLN3-245ENST00000636172 UQCRFS1P1P0C7P4 283 aa25.1■■□□□ 1.61
CLN3-245ENST00000636172 HIBADHP31937 336 aaKnown RBP25.1■■□□□ 1.61
CLN3-245ENST00000636172 VPS37DQ86XT2 251 aa25.1■■□□□ 1.61
CLN3-245ENST00000636172 MCAMP43121 646 aa25.09■■□□□ 1.61
CLN3-245ENST00000636172 PSMD1Q99460 953 aa25.09■■□□□ 1.61
CLN3-245ENST00000636172 HAUS7Q99871 368 aa25.09■■□□□ 1.61
CLN3-245ENST00000636172 MAP4K4O95819 1239 aaPredicted RBP25.08■■□□□ 1.61
CLN3-245ENST00000636172 ZNF804AQ7Z570 1209 aa25.08■■□□□ 1.61
CLN3-245ENST00000636172 EYA3Q99504 573 aa25.08■■□□□ 1.61
CLN3-245ENST00000636172 NDUFB9Q9Y6M9 179 aa25.08■■□□□ 1.61
CLN3-245ENST00000636172 MYH13Q9UKX3 1938 aa25.07■■□□□ 1.6
CLN3-245ENST00000636172 RIMBP2O15034 1052 aa25.07■■□□□ 1.6
CLN3-245ENST00000636172 SDSP20132 328 aa25.07■■□□□ 1.6
CLN3-245ENST00000636172 RASGRF1Q13972 1273 aa25.07■■□□□ 1.6
CLN3-245ENST00000636172 WASHC4Q2M389 1173 aa25.07■■□□□ 1.6
CLN3-245ENST00000636172 PI16Q6UXB8 463 aa25.07■■□□□ 1.6
CLN3-245ENST00000636172 SUPT20HQ8NEM7 779 aa25.07■■□□□ 1.6
CLN3-245ENST00000636172 GNL3LQ9NVN8 582 aaKnown RBP25.07■■□□□ 1.6
CLN3-245ENST00000636172 COL1A1P02452 1464 aaPredicted RBP25.07■■□□□ 1.6
CLN3-245ENST00000636172 DNAJC2Q99543 621 aaKnown RBP25.07■■□□□ 1.6
CLN3-245ENST00000636172 ZC3H12CQ9C0D7 883 aaKnown RBP25.07■■□□□ 1.6
CLN3-245ENST00000636172 SNRKQ9NRH2 765 aa25.07■■□□□ 1.6
CLN3-245ENST00000636172 IQSEC3Q9UPP2 1182 aaPredicted RBP25.07■■□□□ 1.6
CLN3-245ENST00000636172 AK9Q5TCS8 1911 aa25.06■■□□□ 1.6
CLN3-245ENST00000636172 FKBP4Q02790 459 aaKnown RBP eCLIP25.06■■□□□ 1.6
CLN3-245ENST00000636172 EDC3Q96F86 508 aaKnown RBP25.06■■□□□ 1.6
CLN3-245ENST00000636172 HMG20BQ9P0W2 317 aa25.06■■□□□ 1.6
CLN3-245ENST00000636172 SPATA5Q8NB90 893 aa25.05■■□□□ 1.6
CLN3-245ENST00000636172 TRIM6-TRIM34B2RNG4 842 aa25.04■■□□□ 1.6
CLN3-245ENST00000636172 ZBTB22O15209 634 aa25.04■■□□□ 1.6
CLN3-245ENST00000636172 ZAP70P43403 619 aa25.04■■□□□ 1.6
CLN3-245ENST00000636172 TDRD7Q8NHU6 1098 aaKnown RBP25.04■■□□□ 1.6
CLN3-245ENST00000636172 CD209Q9NNX6 404 aa25.04■■□□□ 1.6
CLN3-245ENST00000636172 NFKBIEO00221 500 aa25.03■■□□□ 1.6
CLN3-245ENST00000636172 SEMA3EO15041 775 aa25.03■■□□□ 1.6
CLN3-245ENST00000636172 KIAA2012Q0VF49 1180 aa25.03■■□□□ 1.6
CLN3-245ENST00000636172 AOC3Q16853 763 aa25.03■■□□□ 1.6
CLN3-245ENST00000636172 COA1Q9GZY4 146 aa25.03■■□□□ 1.6
CLN3-245ENST00000636172 PAG1Q9NWQ8 432 aa25.03■■□□□ 1.6
CLN3-245ENST00000636172 CHD4Q14839 1912 aa25.02■■□□□ 1.6
CLN3-245ENST00000636172 GOLIM4O00461 696 aa25.02■■□□□ 1.6
CLN3-245ENST00000636172 IL1R1P14778 569 aa25.02■■□□□ 1.6
CLN3-245ENST00000636172 CNTROBQ8N137 903 aa25.02■■□□□ 1.6
CLN3-245ENST00000636172 RILPL2Q969X0 211 aa25.02■■□□□ 1.6
CLN3-245ENST00000636172 TAOK3Q9H2K8 898 aa25.02■■□□□ 1.6
CLN3-245ENST00000636172 ZNF277Q9NRM2 450 aaPredicted RBP25.02■■□□□ 1.6
CLN3-245ENST00000636172 DOK7Q18PE1 504 aa25.02■■□□□ 1.6
CLN3-245ENST00000636172 EVI5LQ96CN4 794 aa25.02■■□□□ 1.6
CLN3-245ENST00000636172 ANTXR1Q9H6X2 564 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms