RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 MSH6P52701 1360 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 GOLGA6CA6NDK9 693 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 GOLGA6BA6NDN3 693 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 DKC1O60832 514 aaKnown RBP eCLIP6.26□□□□□ -1.416e-8■■■■■ 53.6
SCN1A-209ENST00000635750 GOLGA6DP0CG33 693 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 IFT74Q96LB3 600 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 CCDC8Q9H0W5 538 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 GOLGA6AQ9NYA3 693 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 LIMCH1Q9UPQ0 1083 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 NAIPQ13075 1403 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 CEP120Q8N960 986 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 SLC12A5Q9H2X9 1139 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 ZFYP08048 801 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 CYP7A1P22680 504 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 STRN3Q13033 797 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 TRPC3Q13507 836 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 SNW1Q13573 536 aaKnown RBP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 ARHGEF6Q15052 776 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 RTN1Q16799 776 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 AKNAD1Q5T1N1 836 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 NAA16Q6N069 864 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 ZNF408Q9H9D4 720 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 TFCP2L1Q9NZI6 479 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 CAVIN2O95810 425 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 RRAGBQ5VZM2 374 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 MROH2BQ7Z745 1585 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 WDR66Q8TBY9 1149 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 SEC62Q99442 399 aaKnown RBP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 NAP1L4Q99733 375 aaKnown RBP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 ZSCAN16Q9H4T2 348 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 UBAP1LF5GYI3 381 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 IFNL2Q8IZJ0 200 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 NEK11Q8NG66 645 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 TSGA10Q9BZW7 698 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 TERF1P54274 439 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 EIF6P56537 245 aaKnown RBP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 SETDB1Q15047 1291 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 MIS18AQ9NYP9 233 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 SYKP43405 635 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 PPP1R21Q6ZMI0 780 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 ZNF830Q96NB3 372 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 NOX5Q96PH1 765 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 SELENOSQ9BQE4 189 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 TRMT1Q9NXH9 659 aaKnown RBP6.26□□□□□ -1.41
SCN1A-209ENST00000635750 MAP3K2Q9Y2U5 619 aa6.26□□□□□ -1.41
SCN1A-209ENST00000635750 RPL13P26373 211 aaKnown RBP6.25□□□□□ -1.41
SCN1A-209ENST00000635750 ASIC1P78348 528 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 SEL1L2Q5TEA6 688 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 ARHGEF10LQ9HCE6 1279 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 ORC3Q9UBD5 711 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-209ENST00000635750 RTCBQ9Y3I0 505 aaKnown RBP6.25□□□□□ -1.41
SCN1A-209ENST00000635750 PTPRCP08575 1304 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 RTL9Q8NET4 1388 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 CAMSAP2Q08AD1 1489 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 ZBTB43O43298 467 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 GNA11P29992 359 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 RILPL1Q5EBL4 403 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 FAM200AQ8TCP9 573 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 STMN2Q93045 179 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 CARD10Q9BWT7 1032 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 ZBTB3Q9H5J0 574 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 SLC4A4Q9Y6R1 1079 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 GNAT2P19087 354 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 KRT83P78385 493 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 SPAG1Q07617 926 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 SH2D4BQ5SQS7 431 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 KRT79Q5XKE5 535 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 AFAP1Q8N556 730 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 MAGEB6P1A0A0J9YX57 407 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 CTAGE9A4FU28 777 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 CASQ2O14958 399 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-209ENST00000635750 OATP04181 439 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 HSPA1LP34931 641 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 DNM2P50570 870 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 TUBB4BP68371 445 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 STK24Q9Y6E0 443 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 HECW1Q76N89 1606 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 ATP5J2-PTCD1G3V325 749 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 BIN1O00499 593 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 UBASH3AP57075 661 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 KRT28Q7Z3Y7 464 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 GPATCH11Q8N954 259 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 SP4Q02446 784 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 CADPS2Q86UW7 1296 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 C8orf37Q96NL8 207 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 VCX3BQ9H321 246 aa6.25□□□□□ -1.41
SCN1A-209ENST00000635750 MGEA5O60502 916 aa6.24□□□□□ -1.41
SCN1A-209ENST00000635750 ATP2C2O75185 946 aa6.24□□□□□ -1.41
SCN1A-209ENST00000635750 EPB41P11171 864 aaKnown RBP6.24□□□□□ -1.41
SCN1A-209ENST00000635750 UAP1Q16222 522 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-209ENST00000635750 IPO4Q8TEX9 1081 aaKnown RBP6.24□□□□□ -1.41
SCN1A-209ENST00000635750 HVCN1Q96D96 273 aa6.24□□□□□ -1.41
SCN1A-209ENST00000635750 RBM17Q96I25 401 aaKnown RBP6.24□□□□□ -1.41
SCN1A-209ENST00000635750 NEK1Q96PY6 1258 aa6.24□□□□□ -1.41
SCN1A-209ENST00000635750 KCNK9Q9NPC2 374 aa6.24□□□□□ -1.41
SCN1A-209ENST00000635750 RTEL1Q9NZ71 1219 aa6.24□□□□□ -1.41
SCN1A-209ENST00000635750 USH1CQ9Y6N9 552 aa6.24□□□□□ -1.41
SCN1A-209ENST00000635750 PPFIA2O75334 1257 aa6.24□□□□□ -1.41
SCN1A-209ENST00000635750 AFMP43652 599 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms