RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 MYH3P11055 1940 aa30.49■■■□□ 2.47
CPSF1-214ENST00000622776 CCT4P50991 539 aaKnown RBP30.48■■■□□ 2.47
CPSF1-214ENST00000622776 SAGE1Q9NXZ1 904 aa30.48■■■□□ 2.47
CPSF1-214ENST00000622776 PITPNM2Q9BZ72 1349 aa30.47■■■□□ 2.47
CPSF1-214ENST00000622776 RGS19P49795 217 aa30.46■■■□□ 2.47
CPSF1-214ENST00000622776 FKBP1BP68106 108 aa30.45■■■□□ 2.47
CPSF1-214ENST00000622776 DACT2Q5SW24 774 aa30.45■■■□□ 2.47
CPSF1-214ENST00000622776 RNF186Q9NXI6 227 aa30.45■■■□□ 2.47
CPSF1-214ENST00000622776 IL16Q14005 1332 aa30.45■■■□□ 2.46
CPSF1-214ENST00000622776 TRPA1O75762 1119 aa30.44■■■□□ 2.46
CPSF1-214ENST00000622776 IGHMBP2P38935 993 aaKnown RBP30.44■■■□□ 2.46
CPSF1-214ENST00000622776 GCKRQ14397 625 aa30.44■■■□□ 2.46
CPSF1-214ENST00000622776 CSRNP1Q96S65 589 aa30.44■■■□□ 2.46
CPSF1-214ENST00000622776 MXD3Q9BW11 206 aa30.44■■■□□ 2.46
CPSF1-214ENST00000622776 PLA2G12BQ9BX93 195 aa30.44■■■□□ 2.46
CPSF1-214ENST00000622776 COA1Q9GZY4 146 aa30.44■■■□□ 2.46
CPSF1-214ENST00000622776 LEMD3Q9Y2U8 911 aa30.44■■■□□ 2.46
CPSF1-214ENST00000622776 SPEF2Q9C093 1822 aa30.43■■■□□ 2.46
CPSF1-214ENST00000622776 MLLT1Q03111 559 aaPredicted RBP30.43■■■□□ 2.46
CPSF1-214ENST00000622776 FLIIQ13045 1269 aa30.43■■■□□ 2.46
CPSF1-214ENST00000622776 NBPF9Q3BBW0 867 aa30.42■■■□□ 2.46
CPSF1-214ENST00000622776 STRIP1Q5VSL9 837 aa30.42■■■□□ 2.46
CPSF1-214ENST00000622776 TXNRD3Q86VQ6 643 aa30.42■■■□□ 2.46
CPSF1-214ENST00000622776 RASAL3Q86YV0 1011 aa30.42■■■□□ 2.46
CPSF1-214ENST00000622776 FBXW7Q969H0 707 aa30.42■■■□□ 2.46
CPSF1-214ENST00000622776 SCAF8Q9UPN6 1271 aaKnown RBP30.42■■■□□ 2.46
CPSF1-214ENST00000622776 ITGA6P23229 1130 aa30.41■■■□□ 2.46
CPSF1-214ENST00000622776 OGFOD1Q8N543 542 aa30.41■■■□□ 2.46
CPSF1-214ENST00000622776 AKAP11Q9UKA4 1901 aa30.41■■■□□ 2.46
CPSF1-214ENST00000622776 MYO3BQ8WXR4 1341 aa30.41■■■□□ 2.46
CPSF1-214ENST00000622776 CASP7P55210 303 aa30.4■■■□□ 2.46
CPSF1-214ENST00000622776 NCBP3Q53F19 620 aaKnown RBP30.4■■■□□ 2.46
CPSF1-214ENST00000622776 DNAAF4Q8WXU2 420 aa30.4■■■□□ 2.46
CPSF1-214ENST00000622776 ANKRD2Q9GZV1 360 aa30.4■■■□□ 2.46
CPSF1-214ENST00000622776 MYH16Q9H6N6 1097 aa30.4■■■□□ 2.46
CPSF1-214ENST00000622776 PAPPA2Q9BXP8 1791 aa30.39■■■□□ 2.46
CPSF1-214ENST00000622776 CSF1RP07333 972 aa30.39■■■□□ 2.46
CPSF1-214ENST00000622776 FKBP5Q13451 457 aaPredicted RBP30.39■■■□□ 2.46
CPSF1-214ENST00000622776 REM2Q8IYK8 340 aaPredicted RBP30.39■■■□□ 2.46
CPSF1-214ENST00000622776 ZNF804BA4D1E1 1349 aa30.39■■■□□ 2.46
CPSF1-214ENST00000622776 PRAMEF18Q5VWM3 479 aa30.38■■■□□ 2.45
CPSF1-214ENST00000622776 MOB2Q70IA6 237 aa30.38■■■□□ 2.45
CPSF1-214ENST00000622776 LINS1Q8NG48 757 aa30.38■■■□□ 2.45
CPSF1-214ENST00000622776 MPHOSPH8Q99549 860 aa30.38■■■□□ 2.45
CPSF1-214ENST00000622776 WNT10BO00744 389 aa30.37■■■□□ 2.45
CPSF1-214ENST00000622776 FANCIQ9NVI1 1328 aa30.37■■■□□ 2.45
CPSF1-214ENST00000622776 UBE2Q2LH0YL09 131 aa30.36■■■□□ 2.45
CPSF1-214ENST00000622776 KLRK1P26718 216 aa30.36■■■□□ 2.45
CPSF1-214ENST00000622776 TTLL5Q6EMB2 1281 aa30.36■■■□□ 2.45
CPSF1-214ENST00000622776 MMP14P50281 582 aa30.35■■■□□ 2.45
CPSF1-214ENST00000622776 ZNF646O15015 1829 aaPredicted RBP30.35■■■□□ 2.45
CPSF1-214ENST00000622776 VAMP4O75379 141 aa30.34■■■□□ 2.45
CPSF1-214ENST00000622776 CACNA1FO60840 1977 aa30.34■■■□□ 2.45
CPSF1-214ENST00000622776 KCNJ4P48050 445 aa30.33■■■□□ 2.45
CPSF1-214ENST00000622776 CHRNDQ07001 517 aa30.33■■■□□ 2.45
CPSF1-214ENST00000622776 SASH1O94885 1247 aa30.32■■■□□ 2.44
CPSF1-214ENST00000622776 GTF2IP78347 998 aa30.32■■■□□ 2.44
CPSF1-214ENST00000622776 TTLL12Q14166 644 aaPredicted RBP30.32■■■□□ 2.44
CPSF1-214ENST00000622776 KIAA0825Q8IV33 1275 aa30.32■■■□□ 2.44
CPSF1-214ENST00000622776 MRS2Q9HD23 443 aa30.32■■■□□ 2.44
CPSF1-214ENST00000622776 ANKRD18BA2A2Z9 1011 aa30.31■■■□□ 2.44
CPSF1-214ENST00000622776 NF2P35240 595 aa30.31■■■□□ 2.44
CPSF1-214ENST00000622776 WDR63Q8IWG1 891 aa30.31■■■□□ 2.44
CPSF1-214ENST00000622776 HDAC9Q9UKV0 1011 aa30.31■■■□□ 2.44
CPSF1-214ENST00000622776 SALL2Q9Y467 1007 aaPredicted RBP30.31■■■□□ 2.44
CPSF1-214ENST00000622776 CD209Q9NNX6 404 aa30.3■■■□□ 2.44
CPSF1-214ENST00000622776 PDE4DIPQ5VU43 2346 aa30.29■■■□□ 2.44
CPSF1-214ENST00000622776 EXOSC9Q06265 439 aaKnown RBP30.29■■■□□ 2.44
CPSF1-214ENST00000622776 CTU1Q7Z7A3 348 aaKnown RBP30.28■■■□□ 2.44
CPSF1-214ENST00000622776 APOBEC3FQ8IUX4 373 aaKnown RBP30.28■■■□□ 2.44
CPSF1-214ENST00000622776 ZBED3Q96IU2 234 aaPredicted RBP30.28■■■□□ 2.44
CPSF1-214ENST00000622776 SNAP23O00161 211 aa30.27■■■□□ 2.44
CPSF1-214ENST00000622776 FOXO4P98177 505 aa30.27■■■□□ 2.44
CPSF1-214ENST00000622776 IRS2Q9Y4H2 1338 aa30.26■■■□□ 2.44
CPSF1-214ENST00000622776 F6X3S4 739 aa30.26■■■□□ 2.43
CPSF1-214ENST00000622776 TAF5LO75529 589 aa30.26■■■□□ 2.43
CPSF1-214ENST00000622776 IFIT5Q13325 482 aaKnown RBP30.26■■■□□ 2.43
CPSF1-214ENST00000622776 HELBQ8NG08 1087 aaPredicted RBP30.26■■■□□ 2.43
CPSF1-214ENST00000622776 BEND3Q5T5X7 828 aa30.25■■■□□ 2.43
CPSF1-214ENST00000622776 C15orf52Q6ZUT6 534 aaKnown RBP30.25■■■□□ 2.43
CPSF1-214ENST00000622776 CHMP3Q9Y3E7 222 aa30.25■■■□□ 2.43
CPSF1-214ENST00000622776 ARMC9Q7Z3E5 817 aa30.24■■■□□ 2.43
CPSF1-214ENST00000622776 TM4SF4P48230 202 aa30.23■■■□□ 2.43
CPSF1-214ENST00000622776 PTPN12Q05209 780 aaKnown RBP30.23■■■□□ 2.43
CPSF1-214ENST00000622776 PRKG1Q13976 671 aa30.23■■■□□ 2.43
CPSF1-214ENST00000622776 CERS5Q8N5B7 392 aa30.23■■■□□ 2.43
CPSF1-214ENST00000622776 TBC1D8O95759 1140 aa30.22■■■□□ 2.43
CPSF1-214ENST00000622776 DLGAP5Q15398 846 aa30.22■■■□□ 2.43
CPSF1-214ENST00000622776 MKRN3Q13064 507 aaKnown RBP30.21■■■□□ 2.43
CPSF1-214ENST00000622776 LMBR1LQ6UX01 489 aa30.21■■■□□ 2.43
CPSF1-214ENST00000622776 SPINK5Q9NQ38 1064 aaPredicted RBP30.21■■■□□ 2.43
CPSF1-214ENST00000622776 ANP32CO43423 234 aa30.2■■■□□ 2.43
CPSF1-214ENST00000622776 EPHA10Q5JZY3 1008 aa30.2■■■□□ 2.43
CPSF1-214ENST00000622776 LDLRAD1Q5T700 205 aa30.2■■■□□ 2.43
CPSF1-214ENST00000622776 ZNF804AQ7Z570 1209 aa30.2■■■□□ 2.43
CPSF1-214ENST00000622776 MTMR14Q8NCE2 650 aa30.2■■■□□ 2.43
CPSF1-214ENST00000622776 IL1R1P14778 569 aa30.19■■■□□ 2.42
CPSF1-214ENST00000622776 SOX10P56693 466 aa30.19■■■□□ 2.42
CPSF1-214ENST00000622776 ZNF296Q8WUU4 475 aaPredicted RBP30.19■■■□□ 2.42
CPSF1-214ENST00000622776 DEFB129Q9H1M3 183 aa30.19■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms