RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 TMC6Q7Z403 805 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 PLCD4Q9BRC7 762 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 CCDC172P0C7W6 258 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 UBXN4Q92575 508 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 BRPF3Q9ULD4 1205 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 ATP10AO60312 1499 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 SP4Q02446 784 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 ANKRD44Q8N8A2 993 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 TCEANC2Q96MN5 208 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 ORAI2Q96SN7 254 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 CRACR2AQ9BSW2 395 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 SYKP43405 635 aa12.99□□□□□ -0.33
CLIP1-219ENST00000620786 TTC6Q86TZ1 520 aa12.99□□□□□ -0.33
CLIP1-219ENST00000620786 TEX11Q8IYF3 940 aa12.99□□□□□ -0.33
CLIP1-219ENST00000620786 CCDC87Q9NVE4 849 aa12.99□□□□□ -0.33
CLIP1-219ENST00000620786 A0A1W2PP64 1363 aa12.99□□□□□ -0.33
CLIP1-219ENST00000620786 ABCC2Q92887 1545 aa12.99□□□□□ -0.33
CLIP1-219ENST00000620786 IGHDP01880 384 aa12.99□□□□□ -0.33
CLIP1-219ENST00000620786 GBP3Q9H0R5 595 aa12.99□□□□□ -0.33
CLIP1-219ENST00000620786 KIF2AO00139 706 aaPredicted RBP12.99□□□□□ -0.33
CLIP1-219ENST00000620786 KRT2P35908 639 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 BAG6P46379 1132 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 LARGE2Q8N3Y3 721 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 TAOK3Q9H2K8 898 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 MAP3K19Q56UN5 1328 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 FAM13AO94988 1023 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 ITGA6P23229 1130 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 DHX37Q8IY37 1157 aaKnown RBP12.98□□□□□ -0.33
CLIP1-219ENST00000620786 HCLS1P14317 486 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-219ENST00000620786 ASIC1P78348 528 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 DPP8Q6V1X1 898 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-219ENST00000620786 DPH6Q7L8W6 267 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 DDX17Q92841 729 aaKnown RBP12.98□□□□□ -0.33
CLIP1-219ENST00000620786 FAM89AQ96GI7 184 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 ESYT1Q9BSJ8 1104 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 IMPG2Q9BZV3 1241 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 URI1O94763 535 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-219ENST00000620786 PARP1P09874 1014 aaKnown RBP12.98□□□□□ -0.33
CLIP1-219ENST00000620786 HIBADHP31937 336 aaKnown RBP12.98□□□□□ -0.33
CLIP1-219ENST00000620786 MRVI1Q9Y6F6 885 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 UQCRHLA0A096LP55 91 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 UQCRHP07919 91 aa12.98□□□□□ -0.33
CLIP1-219ENST00000620786 MAP2K1Q02750 393 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-219ENST00000620786 HDAC1Q13547 482 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-219ENST00000620786 RBM27Q9P2N5 1060 aaKnown RBP12.98□□□□□ -0.33
CLIP1-219ENST00000620786 GCOM1H8Y6P7 765 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-219ENST00000620786 BACH1O14867 736 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 MYZAPP0CAP1 466 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 TNPO1Q92973 898 aaKnown RBP12.97□□□□□ -0.33
CLIP1-219ENST00000620786 HOMER2Q9NSB8 354 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 TTC41PQ6P2S7 1318 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 PRIM1P49642 420 aaKnown RBP12.97□□□□□ -0.33
CLIP1-219ENST00000620786 BEGAINQ9BUH8 593 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 CALML3P27482 149 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 MAP9Q49MG5 647 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 SUPT20HQ8NEM7 779 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 PLBD2Q8NHP8 589 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 KRT24Q2M2I5 525 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 TBC1D2Q9BYX2 928 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 ARHGEF10O15013 1369 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 CCDC66A2RUB6 948 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 ACTN2P35609 894 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 TAF12Q16514 161 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 CHST3Q7LGC8 479 aa12.97□□□□□ -0.33
CLIP1-219ENST00000620786 MCM3P25205 808 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 KRT79Q5XKE5 535 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 ZNF790Q6PG37 636 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 LRRC45Q96CN5 670 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 BCCIPQ9P287 314 aaKnown RBP eCLIP12.96□□□□□ -0.33
CLIP1-219ENST00000620786 SSX2IPQ9Y2D8 614 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 N4BP3O15049 544 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 MBD4O95243 580 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 RGS22Q8NE09 1264 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 PKD2L1Q9P0L9 805 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 MAST3O60307 1309 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 ARHGEF10LQ9HCE6 1279 aa12.96□□□□□ -0.33
CLIP1-219ENST00000620786 PDE8AO60658 829 aa12.96□□□□□ -0.34
CLIP1-219ENST00000620786 PRKG1Q13976 671 aa12.96□□□□□ -0.34
CLIP1-219ENST00000620786 KCNG4Q8TDN1 519 aa12.96□□□□□ -0.34
CLIP1-219ENST00000620786 KIF21AQ7Z4S6 1674 aa12.96□□□□□ -0.34
CLIP1-219ENST00000620786 ZSCAN22P10073 491 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-219ENST00000620786 SH3TC1Q8TE82 1336 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 TMX3Q96JJ7 454 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 GPCPD1Q9NPB8 672 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 SLAIN2Q9P270 581 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 NOD1Q9Y239 953 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 MCM7P33993 719 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 PUM3Q15397 648 aaKnown RBP12.95□□□□□ -0.34
CLIP1-219ENST00000620786 IFI16Q16666 785 aaKnown RBP12.95□□□□□ -0.34
CLIP1-219ENST00000620786 TSPYL6Q8N831 410 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 TSNARE1Q96NA8 513 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 SPAG5Q96R06 1193 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 NAA15Q9BXJ9 866 aaKnown RBP12.95□□□□□ -0.34
CLIP1-219ENST00000620786 MARCKSP29966 332 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-219ENST00000620786 GNA11P29992 359 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 MRPS9P82933 396 aaKnown RBP12.95□□□□□ -0.34
CLIP1-219ENST00000620786 AKNAD1Q5T1N1 836 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 DDX21Q9NR30 783 aaKnown RBP eCLIP12.95□□□□□ -0.34
CLIP1-219ENST00000620786 RBM28Q9NW13 759 aaKnown RBP12.95□□□□□ -0.34
CLIP1-219ENST00000620786 TRMT1Q9NXH9 659 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms