RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 UBE4AQ14139 1066 aa10.92□□□□□ -0.66
SMAD4-217ENST00000611848 LRRC24Q50LG9 513 aa10.92□□□□□ -0.66
SMAD4-217ENST00000611848 GPBP1L1Q9HC44 474 aaPredicted RBP10.92□□□□□ -0.66
SMAD4-217ENST00000611848 MED23Q9ULK4 1368 aa10.92□□□□□ -0.66
SMAD4-217ENST00000611848 G3V3G9 751 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 METTL24Q5JXM2 366 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 DCAF8Q5TAQ9 597 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 C15orf52Q6ZUT6 534 aaKnown RBP10.91□□□□□ -0.66
SMAD4-217ENST00000611848 HELBQ8NG08 1087 aaPredicted RBP10.91□□□□□ -0.66
SMAD4-217ENST00000611848 GPR101Q96P66 508 aaPredicted RBP10.91□□□□□ -0.66
SMAD4-217ENST00000611848 IPO9Q96P70 1041 aaKnown RBP10.91□□□□□ -0.66
SMAD4-217ENST00000611848 C1orf115Q9H7X2 142 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 ZBTB40Q9NUA8 1239 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 PNMA6EA0A0J9YXQ4 647 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 ECE2O60344 883 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 PDE8BO95263 885 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 IL15P40933 162 aaPredicted RBP10.91□□□□□ -0.66
SMAD4-217ENST00000611848 PLCB2Q00722 1185 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 POLA2Q14181 598 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 PODNQ7Z5L7 613 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 GPC2Q8N158 579 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 SSH3Q8TE77 659 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 ZNF526Q8TF50 670 aaPredicted RBP10.91□□□□□ -0.66
SMAD4-217ENST00000611848 DBNDD1Q9H9R9 158 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 PCDHB15Q9Y5E8 787 aa10.91□□□□□ -0.66
SMAD4-217ENST00000611848 ZNF541Q9H0D2 1346 aa10.9□□□□□ -0.66
SMAD4-217ENST00000611848 WTIPA6NIX2 430 aaPredicted RBP10.9□□□□□ -0.66
SMAD4-217ENST00000611848 DDNO94850 711 aaPredicted RBP10.9□□□□□ -0.66
SMAD4-217ENST00000611848 TNIP1Q15025 636 aa10.9□□□□□ -0.66
SMAD4-217ENST00000611848 DOK7Q18PE1 504 aa10.9□□□□□ -0.66
SMAD4-217ENST00000611848 CIAPIN1Q6FI81 312 aa10.9□□□□□ -0.66
SMAD4-217ENST00000611848 CEP85Q6P2H3 762 aa10.9□□□□□ -0.66
SMAD4-217ENST00000611848 ATG9AQ7Z3C6 839 aa10.9□□□□□ -0.66
SMAD4-217ENST00000611848 RPAP2Q8IXW5 612 aaPredicted RBP10.9□□□□□ -0.66
SMAD4-217ENST00000611848 VGLL2Q8N8G2 317 aa10.9□□□□□ -0.66
SMAD4-217ENST00000611848 COA1Q9GZY4 146 aa10.9□□□□□ -0.66
SMAD4-217ENST00000611848 SIL1Q9H173 461 aa10.9□□□□□ -0.66
SMAD4-217ENST00000611848 CEP126Q9P2H0 1117 aa10.9□□□□□ -0.66
SMAD4-217ENST00000611848 PA2G4Q9UQ80 394 aaKnown RBP10.9□□□□□ -0.66
SMAD4-217ENST00000611848 WDR90Q96KV7 1748 aa10.9□□□□□ -0.67
SMAD4-217ENST00000611848 SCN4AP35499 1836 aa10.89□□□□□ -0.67
SMAD4-217ENST00000611848 YDJCA8MPS7 323 aa10.89□□□□□ -0.67
SMAD4-217ENST00000611848 SNAP23O00161 211 aa10.89□□□□□ -0.67
SMAD4-217ENST00000611848 CXCL9Q07325 125 aa10.89□□□□□ -0.67
SMAD4-217ENST00000611848 G3BP1Q13283 466 aaKnown RBP eCLIP10.89□□□□□ -0.67
SMAD4-217ENST00000611848 TXNRD3Q86VQ6 643 aa10.89□□□□□ -0.67
SMAD4-217ENST00000611848 L3MBTL3Q96JM7 780 aaPredicted RBP10.89□□□□□ -0.67
SMAD4-217ENST00000611848 SCN9AQ15858 1988 aa10.89□□□□□ -0.67
SMAD4-217ENST00000611848 RAD17O75943 681 aa10.88□□□□□ -0.67
SMAD4-217ENST00000611848 VEGFAP15692 232 aaPredicted RBP10.88□□□□□ -0.67
SMAD4-217ENST00000611848 PUM3Q15397 648 aaKnown RBP10.88□□□□□ -0.67
SMAD4-217ENST00000611848 C8orf34Q49A92 452 aa10.88□□□□□ -0.67
SMAD4-217ENST00000611848 ZNF804AQ7Z570 1209 aa10.88□□□□□ -0.67
SMAD4-217ENST00000611848 RRAGCQ9HB90 399 aa10.88□□□□□ -0.67
SMAD4-217ENST00000611848 NOP58Q9Y2X3 529 aaKnown RBP10.88□□□□□ -0.67
SMAD4-217ENST00000611848 GJA3Q9Y6H8 435 aa10.88□□□□□ -0.67
SMAD4-217ENST00000611848 PSME4Q14997 1843 aa10.88□□□□□ -0.67
SMAD4-217ENST00000611848 IRS2Q9Y4H2 1338 aa10.88□□□□□ -0.67
SMAD4-217ENST00000611848 IQCA1LA6NCM1 817 aa10.87□□□□□ -0.67
SMAD4-217ENST00000611848 HMMRO75330 724 aa10.87□□□□□ -0.67
SMAD4-217ENST00000611848 IFIT1P09914 478 aaKnown RBP10.87□□□□□ -0.67
SMAD4-217ENST00000611848 FGFR2P21802 821 aa10.87□□□□□ -0.67
SMAD4-217ENST00000611848 KLRK1P26718 216 aa10.87□□□□□ -0.67
SMAD4-217ENST00000611848 LPIN2Q92539 896 aa10.87□□□□□ -0.67
SMAD4-217ENST00000611848 RWDD1Q9H446 243 aaPredicted RBP10.87□□□□□ -0.67
SMAD4-217ENST00000611848 NMRK2Q9NPI5 230 aa10.87□□□□□ -0.67
SMAD4-217ENST00000611848 PSMD14O00487 310 aa10.87□□□□□ -0.67
SMAD4-217ENST00000611848 SURF6O75683 361 aaKnown RBP10.87□□□□□ -0.67
SMAD4-217ENST00000611848 SLC5A1P13866 664 aa10.87□□□□□ -0.67
SMAD4-217ENST00000611848 CD209Q9NNX6 404 aa10.87□□□□□ -0.67
SMAD4-217ENST00000611848 U3KPZ7 1027 aaPredicted RBP10.87□□□□□ -0.67
SMAD4-217ENST00000611848 USP17L3A6NCW0 530 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 USP17L4A6NCW7 530 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 POTECB2RU33 542 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 KIF3CO14782 793 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 VIL1P09327 827 aaKnown RBP10.86□□□□□ -0.67
SMAD4-217ENST00000611848 IL1R1P14778 569 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 RPS12P25398 132 aaKnown RBP10.86□□□□□ -0.67
SMAD4-217ENST00000611848 LMOD1P29536 600 aaPredicted RBP10.86□□□□□ -0.67
SMAD4-217ENST00000611848 HIBADHP31937 336 aaKnown RBP10.86□□□□□ -0.67
SMAD4-217ENST00000611848 RGS3P49796 1198 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 HDAC1Q13547 482 aaPredicted RBP10.86□□□□□ -0.67
SMAD4-217ENST00000611848 CAVIN4Q5BKX8 364 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 ERICH6Q7L0X2 663 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 USP17L1Q7RTZ2 530 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 VPS37DQ86XT2 251 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 DPF2Q92785 391 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 FAM84BQ96KN1 310 aaPredicted RBP10.86□□□□□ -0.67
SMAD4-217ENST00000611848 KCNQ5Q9NR82 932 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 HACL1Q9UJ83 578 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 AKAP2Q9Y2D5 859 aa10.86□□□□□ -0.67
SMAD4-217ENST00000611848 GYG1P46976 350 aa10.85□□□□□ -0.67
SMAD4-217ENST00000611848 SCNN1DP51172 638 aa10.85□□□□□ -0.67
SMAD4-217ENST00000611848 OS9Q13438 667 aaPredicted RBP10.85□□□□□ -0.67
SMAD4-217ENST00000611848 ATP2B3Q16720 1220 aa10.85□□□□□ -0.67
SMAD4-217ENST00000611848 HSP90AB4PQ58FF6 505 aa10.85□□□□□ -0.67
SMAD4-217ENST00000611848 STRIP1Q5VSL9 837 aa10.85□□□□□ -0.67
SMAD4-217ENST00000611848 FBXO33Q7Z6M2 555 aa10.85□□□□□ -0.67
SMAD4-217ENST00000611848 C16orf71Q8IYS4 520 aaPredicted RBP10.85□□□□□ -0.67
SMAD4-217ENST00000611848 AGBL3Q8NEM8 1001 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms