RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 ANP32CO43423 234 aa20.13■□□□□ 0.81
SHKBP1-228ENST00000602239 ITGA6P23229 1130 aa20.13■□□□□ 0.81
SHKBP1-228ENST00000602239 NOGQ13253 232 aa20.13■□□□□ 0.81
SHKBP1-228ENST00000602239 RGMBQ6NW40 437 aa20.13■□□□□ 0.81
SHKBP1-228ENST00000602239 WDR63Q8IWG1 891 aa20.13■□□□□ 0.81
SHKBP1-228ENST00000602239 PLA2G12BQ9BX93 195 aa20.13■□□□□ 0.81
SHKBP1-228ENST00000602239 MYOZ2Q9NPC6 264 aa20.13■□□□□ 0.81
SHKBP1-228ENST00000602239 MYH3P11055 1940 aa20.13■□□□□ 0.81
SHKBP1-228ENST00000602239 SPEF2Q9C093 1822 aa20.12■□□□□ 0.81
SHKBP1-228ENST00000602239 CSF1RP07333 972 aa20.12■□□□□ 0.81
SHKBP1-228ENST00000602239 FAM161AQ3B820 660 aa20.12■□□□□ 0.81
SHKBP1-228ENST00000602239 LINS1Q8NG48 757 aa20.12■□□□□ 0.81
SHKBP1-228ENST00000602239 CDCA5Q96FF9 252 aa20.12■□□□□ 0.81
SHKBP1-228ENST00000602239 ZNF609O15014 1411 aa20.11■□□□□ 0.81
SHKBP1-228ENST00000602239 MED23Q9ULK4 1368 aa20.11■□□□□ 0.81
SHKBP1-228ENST00000602239 ZNF316A6NFI3 1004 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-228ENST00000602239 KLRK1P26718 216 aa20.11■□□□□ 0.81
SHKBP1-228ENST00000602239 IGHMBP2P38935 993 aaKnown RBP20.11■□□□□ 0.81
SHKBP1-228ENST00000602239 DACT2Q5SW24 774 aa20.11■□□□□ 0.81
SHKBP1-228ENST00000602239 PSME4Q14997 1843 aa20.11■□□□□ 0.81
SHKBP1-228ENST00000602239 F6X3S4 739 aa20.1■□□□□ 0.81
SHKBP1-228ENST00000602239 CA12O43570 354 aa20.1■□□□□ 0.81
SHKBP1-228ENST00000602239 ZNF157P51786 506 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-228ENST00000602239 MYH16Q9H6N6 1097 aa20.1■□□□□ 0.81
SHKBP1-228ENST00000602239 LEMD3Q9Y2U8 911 aa20.1■□□□□ 0.81
SHKBP1-228ENST00000602239 KIF23Q02241 960 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-228ENST00000602239 NBPF9Q3BBW0 867 aa20.09■□□□□ 0.81
SHKBP1-228ENST00000602239 FBXW7Q969H0 707 aa20.09■□□□□ 0.81
SHKBP1-228ENST00000602239 COA1Q9GZY4 146 aa20.09■□□□□ 0.81
SHKBP1-228ENST00000602239 CASP8AP2Q9UKL3 1982 aa20.08■□□□□ 0.81
SHKBP1-228ENST00000602239 ZNF804BA4D1E1 1349 aa20.08■□□□□ 0.81
SHKBP1-228ENST00000602239 SNAP23O00161 211 aa20.08■□□□□ 0.81
SHKBP1-228ENST00000602239 FOXO4P98177 505 aa20.08■□□□□ 0.81
SHKBP1-228ENST00000602239 PRAMEF18Q5VWM3 479 aa20.08■□□□□ 0.81
SHKBP1-228ENST00000602239 CCDC102AQ96A19 550 aa20.08■□□□□ 0.81
SHKBP1-228ENST00000602239 MPHOSPH8Q99549 860 aa20.08■□□□□ 0.81
SHKBP1-228ENST00000602239 CHRNDQ07001 517 aa20.07■□□□□ 0.8
SHKBP1-228ENST00000602239 BEND3Q5T5X7 828 aa20.07■□□□□ 0.8
SHKBP1-228ENST00000602239 STRIP1Q5VSL9 837 aa20.07■□□□□ 0.8
SHKBP1-228ENST00000602239 MOB2Q70IA6 237 aa20.07■□□□□ 0.8
SHKBP1-228ENST00000602239 ANKRD2Q9GZV1 360 aa20.07■□□□□ 0.8
SHKBP1-228ENST00000602239 ZEB1P37275 1124 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-228ENST00000602239 TTLL5Q6EMB2 1281 aa20.06■□□□□ 0.8
SHKBP1-228ENST00000602239 FAM9BQ8IZU0 186 aa20.06■□□□□ 0.8
SHKBP1-228ENST00000602239 HELBQ8NG08 1087 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-228ENST00000602239 PITPNM2Q9BZ72 1349 aa20.05■□□□□ 0.8
SHKBP1-228ENST00000602239 WNT10BO00744 389 aa20.05■□□□□ 0.8
SHKBP1-228ENST00000602239 TAF5LO75529 589 aa20.05■□□□□ 0.8
SHKBP1-228ENST00000602239 SLC10A3P09131 477 aa20.05■□□□□ 0.8
SHKBP1-228ENST00000602239 CACNA1FO60840 1977 aa20.04■□□□□ 0.8
SHKBP1-228ENST00000602239 ZNF646O15015 1829 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-228ENST00000602239 ANKRD18BA2A2Z9 1011 aa20.04■□□□□ 0.8
SHKBP1-228ENST00000602239 CCDC85CA6NKD9 419 aa20.04■□□□□ 0.8
SHKBP1-228ENST00000602239 GTF2IP78347 998 aa20.04■□□□□ 0.8
SHKBP1-228ENST00000602239 EPHA10Q5JZY3 1008 aa20.04■□□□□ 0.8
SHKBP1-228ENST00000602239 OGFOD1Q8N543 542 aa20.04■□□□□ 0.8
SHKBP1-228ENST00000602239 CSRNP1Q96S65 589 aa20.04■□□□□ 0.8
SHKBP1-228ENST00000602239 MCOLN1Q9GZU1 580 aa20.04■□□□□ 0.8
SHKBP1-228ENST00000602239 TRPA1O75762 1119 aa20.03■□□□□ 0.8
SHKBP1-228ENST00000602239 KCNJ4P48050 445 aa20.03■□□□□ 0.8
SHKBP1-228ENST00000602239 RNF186Q9NXI6 227 aa20.03■□□□□ 0.8
SHKBP1-228ENST00000602239 IRS2Q9Y4H2 1338 aa20.02■□□□□ 0.8
SHKBP1-228ENST00000602239 UBE2Q2LH0YL09 131 aa20.02■□□□□ 0.8
SHKBP1-228ENST00000602239 SASH1O94885 1247 aa20.02■□□□□ 0.8
SHKBP1-228ENST00000602239 IFIT5Q13325 482 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-228ENST00000602239 LMBR1LQ6UX01 489 aa20.02■□□□□ 0.8
SHKBP1-228ENST00000602239 RASAL3Q86YV0 1011 aa20.02■□□□□ 0.8
SHKBP1-228ENST00000602239 KIAA0825Q8IV33 1275 aa20.02■□□□□ 0.8
SHKBP1-228ENST00000602239 CD209Q9NNX6 404 aa20.02■□□□□ 0.8
SHKBP1-228ENST00000602239 CHMP3Q9Y3E7 222 aa20.02■□□□□ 0.8
SHKBP1-228ENST00000602239 MYO3BQ8WXR4 1341 aa20.02■□□□□ 0.79
SHKBP1-228ENST00000602239 ZNF594Q96JF6 807 aaPredicted RBP20.01■□□□□ 0.79
SHKBP1-228ENST00000602239 FKBP1BP68106 108 aa20■□□□□ 0.79
SHKBP1-228ENST00000602239 DGKZQ13574 1117 aa20■□□□□ 0.79
SHKBP1-228ENST00000602239 GRM8O00222 908 aa19.99■□□□□ 0.79
SHKBP1-228ENST00000602239 C15orf52Q6ZUT6 534 aaKnown RBP19.99■□□□□ 0.79
SHKBP1-228ENST00000602239 CERS5Q8N5B7 392 aa19.99■□□□□ 0.79
SHKBP1-228ENST00000602239 ZBED3Q96IU2 234 aaPredicted RBP19.99■□□□□ 0.79
SHKBP1-228ENST00000602239 SAGE1Q9NXZ1 904 aa19.99■□□□□ 0.79
SHKBP1-228ENST00000602239 PLIN1O60240 522 aa19.98■□□□□ 0.79
SHKBP1-228ENST00000602239 SLC4A10Q6U841 1118 aa19.98■□□□□ 0.79
SHKBP1-228ENST00000602239 CCDC57Q2TAC2 916 aa19.97■□□□□ 0.79
SHKBP1-228ENST00000602239 LDHAL6AQ6ZMR3 332 aa19.97■□□□□ 0.79
SHKBP1-228ENST00000602239 C9orf78Q9NZ63 289 aaPredicted RBP19.97■□□□□ 0.79
SHKBP1-228ENST00000602239 HDAC9Q9UKV0 1011 aa19.97■□□□□ 0.79
SHKBP1-228ENST00000602239 PCDHAC2Q9Y5I4 1007 aa19.97■□□□□ 0.79
SHKBP1-228ENST00000602239 PAPPA2Q9BXP8 1791 aa19.97■□□□□ 0.79
SHKBP1-228ENST00000602239 MMP14P50281 582 aa19.96■□□□□ 0.79
SHKBP1-228ENST00000602239 PRKG1Q13976 671 aa19.96■□□□□ 0.79
SHKBP1-228ENST00000602239 TTLL12Q14166 644 aaPredicted RBP19.96■□□□□ 0.79
SHKBP1-228ENST00000602239 KAZALD1Q96I82 304 aa19.96■□□□□ 0.79
SHKBP1-228ENST00000602239 ZNF521Q96K83 1311 aa19.96■□□□□ 0.79
SHKBP1-228ENST00000602239 ALDH1L1O75891 902 aa19.95■□□□□ 0.78
SHKBP1-228ENST00000602239 IL1R1P14778 569 aa19.95■□□□□ 0.78
SHKBP1-228ENST00000602239 TAF7LQ5H9L4 462 aa19.95■□□□□ 0.78
SHKBP1-228ENST00000602239 SUCLG2Q96I99 432 aa19.95■□□□□ 0.78
SHKBP1-228ENST00000602239 SRCIN1Q9C0H9 1055 aa19.95■□□□□ 0.78
SHKBP1-228ENST00000602239 FZD1Q9UP38 647 aa19.95■□□□□ 0.78
SHKBP1-228ENST00000602239 JAG2Q9Y219 1238 aa19.95■□□□□ 0.78
SHKBP1-228ENST00000602239 AKAP11Q9UKA4 1901 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms