RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 BMP4P12644 408 aa7.21□□□□□ -1.26
VRK3-222ENST00000601324 MX2P20592 715 aa7.21□□□□□ -1.26
VRK3-222ENST00000601324 PIP4K2BP78356 416 aa7.21□□□□□ -1.26
VRK3-222ENST00000601324 ZNF438Q7Z4V0 828 aa7.21□□□□□ -1.26
VRK3-222ENST00000601324 NLRP13Q86W25 1043 aa7.21□□□□□ -1.26
VRK3-222ENST00000601324 ALKBH8Q96BT7 664 aaKnown RBP7.21□□□□□ -1.26
VRK3-222ENST00000601324 MBIPQ9NS73 344 aa7.21□□□□□ -1.26
VRK3-222ENST00000601324 NSFL1CQ9UNZ2 370 aaKnown RBP7.21□□□□□ -1.26
VRK3-222ENST00000601324 SHANK2Q9UPX8 1470 aa7.21□□□□□ -1.26
VRK3-222ENST00000601324 CEP170BQ9Y4F5 1589 aaPredicted RBP7.2□□□□□ -1.26
VRK3-222ENST00000601324 MYO3AQ8NEV4 1616 aa7.2□□□□□ -1.26
VRK3-222ENST00000601324 C2CD2LO14523 706 aa7.2□□□□□ -1.26
VRK3-222ENST00000601324 TREHO43280 583 aa7.2□□□□□ -1.26
VRK3-222ENST00000601324 SASH3O75995 380 aa7.2□□□□□ -1.26
VRK3-222ENST00000601324 NEUROD1Q13562 356 aa7.2□□□□□ -1.26
VRK3-222ENST00000601324 PNMA5Q96PV4 448 aa7.2□□□□□ -1.26
VRK3-222ENST00000601324 COL25A1Q9BXS0 654 aaPredicted RBP7.2□□□□□ -1.26
VRK3-222ENST00000601324 ELP3Q9H9T3 547 aa7.2□□□□□ -1.26
VRK3-222ENST00000601324 PRR12Q9ULL5 1215 aa7.2□□□□□ -1.26
VRK3-222ENST00000601324 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.2□□□□□ -1.26
VRK3-222ENST00000601324 KIDINS220Q9ULH0 1771 aa7.19□□□□□ -1.26
VRK3-222ENST00000601324 NEFLP07196 543 aa7.19□□□□□ -1.26
VRK3-222ENST00000601324 DSC3Q14574 896 aa7.19□□□□□ -1.26
VRK3-222ENST00000601324 ZNF468Q5VIY5 522 aaPredicted RBP7.19□□□□□ -1.26
VRK3-222ENST00000601324 KRT25Q7Z3Z0 450 aa7.19□□□□□ -1.26
VRK3-222ENST00000601324 NPAS4Q8IUM7 802 aa7.19□□□□□ -1.26
VRK3-222ENST00000601324 FAM9AQ8IZU1 332 aaPredicted RBP7.19□□□□□ -1.26
VRK3-222ENST00000601324 BHMTQ93088 406 aa7.19□□□□□ -1.26
VRK3-222ENST00000601324 TNFRSF21O75509 655 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 MAP3K6O95382 1288 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 RARAP10276 462 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 NFKB1P19838 968 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 TARSP26639 723 aaKnown RBP7.18□□□□□ -1.26
VRK3-222ENST00000601324 MAP2K3P46734 347 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 FMR1Q06787 632 aaKnown RBP eCLIP7.18□□□□□ -1.26
VRK3-222ENST00000601324 COL19A1Q14993 1142 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 RNFT1Q5M7Z0 435 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 RAB44Q7Z6P3 723 aaPredicted RBP7.18□□□□□ -1.26
VRK3-222ENST00000601324 RGS22Q8NE09 1264 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 SNX29Q8TEQ0 813 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 AVENQ9NQS1 362 aaPredicted RBP7.18□□□□□ -1.26
VRK3-222ENST00000601324 ABI2Q9NYB9 513 aaPredicted RBP7.18□□□□□ -1.26
VRK3-222ENST00000601324 TMEM63CQ9P1W3 806 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 ZFATQ9P243 1243 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 KIF14Q15058 1648 aa7.18□□□□□ -1.26
VRK3-222ENST00000601324 A2ML1A8K2U0 1454 aa7.17□□□□□ -1.26
VRK3-222ENST00000601324 ABCC1P33527 1531 aa7.17□□□□□ -1.26
VRK3-222ENST00000601324 DNMT1P26358 1616 aaKnown RBP7.17□□□□□ -1.26
VRK3-222ENST00000601324 WFS1O76024 890 aa7.17□□□□□ -1.26
VRK3-222ENST00000601324 KRT76Q01546 638 aa7.17□□□□□ -1.26
VRK3-222ENST00000601324 PLCB3Q01970 1234 aa7.17□□□□□ -1.26
VRK3-222ENST00000601324 ZNF775Q96BV0 537 aaPredicted RBP7.17□□□□□ -1.26
VRK3-222ENST00000601324 NIF3L1Q9GZT8 377 aa7.17□□□□□ -1.26
VRK3-222ENST00000601324 MYO5CQ9NQX4 1742 aa7.17□□□□□ -1.26
VRK3-222ENST00000601324 MED14O60244 1454 aa7.17□□□□□ -1.26
VRK3-222ENST00000601324 PLXNC1O60486 1568 aa7.16□□□□□ -1.26
VRK3-222ENST00000601324 MMP20O60882 483 aa7.16□□□□□ -1.26
VRK3-222ENST00000601324 ARAFP10398 606 aa7.16□□□□□ -1.26
VRK3-222ENST00000601324 SRSF11Q05519 484 aaKnown RBP7.16□□□□□ -1.26
VRK3-222ENST00000601324 LCE2CQ5TA81 110 aa7.16□□□□□ -1.26
VRK3-222ENST00000601324 TTC39BQ5VTQ0 682 aaPredicted RBP7.16□□□□□ -1.26
VRK3-222ENST00000601324 SYT9Q86SS6 491 aa7.16□□□□□ -1.26
VRK3-222ENST00000601324 TLR7Q9NYK1 1049 aaKnown RBP7.16□□□□□ -1.26
VRK3-222ENST00000601324 FOXD3Q9UJU5 478 aaPredicted RBP7.16□□□□□ -1.26
VRK3-222ENST00000601324 TROQ12816 1431 aaPredicted RBP7.16□□□□□ -1.26
VRK3-222ENST00000601324 LRRC7Q96NW7 1537 aa7.16□□□□□ -1.26
VRK3-222ENST00000601324 PHACTR2O75167 634 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 SIN3BO75182 1162 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 P4HBP07237 508 aaKnown RBP7.15□□□□□ -1.26
VRK3-222ENST00000601324 ADH6P28332 368 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 SOX18P35713 384 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 ORC1Q13415 861 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 OR13H1Q8NG92 308 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 CNTNAP3BQ96NU0 1288 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 CNTNAP3Q9BZ76 1288 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 DNAJC25Q9H1X3 360 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 CHRDQ9H2X0 955 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 CNTN3Q9P232 1028 aa7.15□□□□□ -1.26
VRK3-222ENST00000601324 CDC42BPBQ9Y5S2 1711 aa7.15□□□□□ -1.27
VRK3-222ENST00000601324 STRCP1A6NGW2 1772 aa7.14□□□□□ -1.27
VRK3-222ENST00000601324 PSAPP07602 524 aa7.14□□□□□ -1.27
VRK3-222ENST00000601324 HOXD8P13378 290 aaPredicted RBP7.14□□□□□ -1.27
VRK3-222ENST00000601324 GMPRP36959 345 aa7.14□□□□□ -1.27
VRK3-222ENST00000601324 PCBP4P57723 403 aaKnown RBP7.14□□□□□ -1.27
VRK3-222ENST00000601324 ARHGAP5Q13017 1502 aa7.14□□□□□ -1.27
VRK3-222ENST00000601324 TREML4Q6UXN2 200 aa7.14□□□□□ -1.27
VRK3-222ENST00000601324 DHX32Q7L7V1 743 aaKnown RBP7.14□□□□□ -1.27
VRK3-222ENST00000601324 C1orf127Q8N9H9 656 aa7.14□□□□□ -1.27
VRK3-222ENST00000601324 PMEPA1Q969W9 287 aa7.14□□□□□ -1.27
VRK3-222ENST00000601324 CSRNP1Q96S65 589 aa7.14□□□□□ -1.27
VRK3-222ENST00000601324 KLF15Q9UIH9 416 aa7.14□□□□□ -1.27
VRK3-222ENST00000601324 ITSN2Q9NZM3 1697 aa7.13□□□□□ -1.27
VRK3-222ENST00000601324 SAMD9LQ8IVG5 1584 aa7.13□□□□□ -1.27
VRK3-222ENST00000601324 EIF1AYO14602 144 aaKnown RBP7.13□□□□□ -1.27
VRK3-222ENST00000601324 CPNE3O75131 537 aaKnown RBP7.13□□□□□ -1.27
VRK3-222ENST00000601324 CES1P23141 567 aa7.13□□□□□ -1.27
VRK3-222ENST00000601324 MAPK8P45983 427 aa7.13□□□□□ -1.27
VRK3-222ENST00000601324 PLAURQ03405 335 aa7.13□□□□□ -1.27
VRK3-222ENST00000601324 ENOX2Q16206 610 aaKnown RBP7.13□□□□□ -1.27
VRK3-222ENST00000601324 EAPPQ56P03 285 aaPredicted RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms