RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 KAZALD1Q96I82 304 aa21.43■■□□□ 1.02
UPF1-210ENST00000600689 EPC1Q9H2F5 836 aa21.43■■□□□ 1.02
UPF1-210ENST00000600689 CAMTA1Q9Y6Y1 1673 aa21.43■■□□□ 1.02
UPF1-210ENST00000600689 GRM8O00222 908 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 HIP1O00291 1037 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 CYP21A2P08686 494 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 SF3A1Q15459 793 aaKnown RBP21.42■■□□□ 1.02
UPF1-210ENST00000600689 NYAP1Q6ZVC0 841 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 CEP57L1Q8IYX8 460 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 ZNF446Q9NWS9 450 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 MEGF6O75095 1541 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 KDM6AO15550 1401 aaPredicted RBP21.42■■□□□ 1.02
UPF1-210ENST00000600689 PTPDC1A2A3K4 754 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 HSP90AA4PQ58FG1 418 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 ZNF790Q6PG37 636 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 KSR2Q6VAB6 950 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 RIC3Q7Z5B4 369 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 ERO1AQ96HE7 468 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 MRFAP1L1Q96HT8 127 aa21.42■■□□□ 1.02
UPF1-210ENST00000600689 GTF2E1P29083 439 aaPredicted RBP21.41■■□□□ 1.02
UPF1-210ENST00000600689 PDIA6Q15084 440 aa21.41■■□□□ 1.02
UPF1-210ENST00000600689 SYCP1Q15431 976 aa21.41■■□□□ 1.02
UPF1-210ENST00000600689 XPO4Q9C0E2 1151 aaKnown RBP21.41■■□□□ 1.02
UPF1-210ENST00000600689 GJB4Q9NTQ9 266 aa21.41■■□□□ 1.02
UPF1-210ENST00000600689 PHKG2P15735 406 aa21.41■■□□□ 1.02
UPF1-210ENST00000600689 DPCR1Q3MIW9 517 aa21.41■■□□□ 1.02
UPF1-210ENST00000600689 ANO10Q9NW15 660 aa21.41■■□□□ 1.02
UPF1-210ENST00000600689 TATP17735 454 aaPredicted RBP21.4■■□□□ 1.02
UPF1-210ENST00000600689 LMOD1P29536 600 aaPredicted RBP21.4■■□□□ 1.02
UPF1-210ENST00000600689 ARHGAP29Q52LW3 1261 aa21.4■■□□□ 1.02
UPF1-210ENST00000600689 EPHA10Q5JZY3 1008 aa21.4■■□□□ 1.02
UPF1-210ENST00000600689 SLC52A2Q9HAB3 445 aa21.4■■□□□ 1.02
UPF1-210ENST00000600689 SIPA1L3O60292 1781 aaPredicted RBP21.4■■□□□ 1.02
UPF1-210ENST00000600689 DNAI1Q9UI46 699 aa21.4■■□□□ 1.02
UPF1-210ENST00000600689 COL15A1P39059 1388 aa21.39■■□□□ 1.02
UPF1-210ENST00000600689 E4F1Q66K89 784 aaPredicted RBP21.39■■□□□ 1.01
UPF1-210ENST00000600689 STOX1Q6ZVD7 989 aa21.39■■□□□ 1.01
UPF1-210ENST00000600689 GPHNQ9NQX3 736 aaPredicted RBP21.39■■□□□ 1.01
UPF1-210ENST00000600689 TMEM51Q9NW97 253 aa21.39■■□□□ 1.01
UPF1-210ENST00000600689 ZNF496Q96IT1 587 aaPredicted RBP21.38■■□□□ 1.01
UPF1-210ENST00000600689 NOL10Q9BSC4 688 aaKnown RBP21.38■■□□□ 1.01
UPF1-210ENST00000600689 CHMP4AQ9BY43 222 aa21.38■■□□□ 1.01
UPF1-210ENST00000600689 OVOS2A0A0G2JMS6 1433 aa21.38■■□□□ 1.01
UPF1-210ENST00000600689 CYP27B1O15528 508 aa21.38■■□□□ 1.01
UPF1-210ENST00000600689 ADD1P35611 737 aaKnown RBP21.38■■□□□ 1.01
UPF1-210ENST00000600689 TFCP2Q12800 502 aa21.38■■□□□ 1.01
UPF1-210ENST00000600689 NEUROD6Q96NK8 337 aa21.38■■□□□ 1.01
UPF1-210ENST00000600689 SEC31AO94979 1220 aaKnown RBP21.37■■□□□ 1.01
UPF1-210ENST00000600689 CDC25BP30305 580 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 NBPF11Q86T75 865 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 CADPS2Q86UW7 1296 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 NSUN7Q8NE18 718 aaKnown RBP21.37■■□□□ 1.01
UPF1-210ENST00000600689 PPP1R13BQ96KQ4 1090 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 ZSCAN16Q9H4T2 348 aaPredicted RBP21.37■■□□□ 1.01
UPF1-210ENST00000600689 DBNLQ9UJU6 430 aaKnown RBP21.37■■□□□ 1.01
UPF1-210ENST00000600689 SFPQP23246 707 aaKnown RBP eCLIP21.37■■□□□ 1.01
UPF1-210ENST00000600689 DBNDD2Q9BQY9 259 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 DDX21Q9NR30 783 aaKnown RBP eCLIP21.37■■□□□ 1.01
UPF1-210ENST00000600689 CLCN6P51797 869 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 NDUFA8P51970 172 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 MTX1Q13505 466 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 ARMCX5Q6P1M9 558 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 SARM1Q6SZW1 724 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 MYD88Q99836 296 aa21.37■■□□□ 1.01
UPF1-210ENST00000600689 CTDNEP1O95476 244 aa21.36■■□□□ 1.01
UPF1-210ENST00000600689 FAM160A1Q05DH4 1040 aa21.36■■□□□ 1.01
UPF1-210ENST00000600689 PCDHA7Q9UN72 937 aa21.36■■□□□ 1.01
UPF1-210ENST00000600689 NEMFO60524 1076 aa21.36■■□□□ 1.01
UPF1-210ENST00000600689 URI1O94763 535 aaPredicted RBP21.36■■□□□ 1.01
UPF1-210ENST00000600689 ZFP91Q96JP5 570 aaPredicted RBP21.36■■□□□ 1.01
UPF1-210ENST00000600689 CCDC66A2RUB6 948 aa21.35■■□□□ 1.01
UPF1-210ENST00000600689 IRX5P78411 483 aaPredicted RBP21.35■■□□□ 1.01
UPF1-210ENST00000600689 STK38Q15208 465 aa21.35■■□□□ 1.01
UPF1-210ENST00000600689 STK11IPQ8N1F8 1099 aa21.35■■□□□ 1.01
UPF1-210ENST00000600689 HMG20BQ9P0W2 317 aa21.35■■□□□ 1.01
UPF1-210ENST00000600689 IGKV5-2P06315 115 aa21.35■■□□□ 1.01
UPF1-210ENST00000600689 ATP1A3P13637 1013 aa21.35■■□□□ 1.01
UPF1-210ENST00000600689 IFNL2Q8IZJ0 200 aa21.35■■□□□ 1.01
UPF1-210ENST00000600689 RCOR1Q9UKL0 485 aa21.35■■□□□ 1.01
UPF1-210ENST00000600689 TNS3Q68CZ2 1445 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 COL18A1P39060 1754 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 C5P01031 1676 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 ATP5J2-PTCD1G3V325 749 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 PTCD1O75127 700 aaKnown RBP21.34■■□□□ 1.01
UPF1-210ENST00000600689 ALDH1L1O75891 902 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 HAND2P61296 217 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 GNL2Q13823 731 aaKnown RBP21.34■■□□□ 1.01
UPF1-210ENST00000600689 KRT32Q14532 448 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 NEK11Q8NG66 645 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 ZCCHC17Q9NP64 241 aaKnown RBP21.34■■□□□ 1.01
UPF1-210ENST00000600689 MED23Q9ULK4 1368 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 GOLIM4O00461 696 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 CTAGE5O15320 804 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 COPS6Q7L5N1 327 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 XAGE3Q8WTP9 111 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 NAT10Q9H0A0 1025 aaKnown RBP21.34■■□□□ 1.01
UPF1-210ENST00000600689 CLIC4Q9Y696 253 aa21.34■■□□□ 1.01
UPF1-210ENST00000600689 SPATA31A3Q5VYP0 1347 aa21.33■■□□□ 1.01
UPF1-210ENST00000600689 TTLL5Q6EMB2 1281 aa21.33■■□□□ 1.01
UPF1-210ENST00000600689 LINS1Q8NG48 757 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms