RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 GMLQ99445 158 aa12.19□□□□□ -0.46
VRK3-215ENST00000599138 PUS3Q9BZE2 481 aaKnown RBP12.19□□□□□ -0.46
VRK3-215ENST00000599138 CLEC11AQ9Y240 323 aa12.19□□□□□ -0.46
VRK3-215ENST00000599138 RIPOR2Q9Y4F9 1068 aa12.19□□□□□ -0.46
VRK3-215ENST00000599138 POLR2AP24928 1970 aaKnown RBP12.18□□□□□ -0.46
VRK3-215ENST00000599138 USP17L3A6NCW0 530 aa12.18□□□□□ -0.46
VRK3-215ENST00000599138 USP17L4A6NCW7 530 aa12.18□□□□□ -0.46
VRK3-215ENST00000599138 H7C1D1 291 aa12.18□□□□□ -0.46
VRK3-215ENST00000599138 UBTFL1P0CB47 393 aaPredicted RBP12.18□□□□□ -0.46
VRK3-215ENST00000599138 RFX5P48382 616 aaPredicted RBP12.18□□□□□ -0.46
VRK3-215ENST00000599138 RSBN1LQ6PCB5 846 aaPredicted RBP12.18□□□□□ -0.46
VRK3-215ENST00000599138 USP17L1Q7RTZ2 530 aa12.18□□□□□ -0.46
VRK3-215ENST00000599138 AGBL3Q8NEM8 1001 aa12.18□□□□□ -0.46
VRK3-215ENST00000599138 TRPM4Q8TD43 1214 aa12.18□□□□□ -0.46
VRK3-215ENST00000599138 ZC3H15Q8WU90 426 aaKnown RBP12.18□□□□□ -0.46
VRK3-215ENST00000599138 CNNM1Q9NRU3 951 aa12.18□□□□□ -0.46
VRK3-215ENST00000599138 KCNJ4P48050 445 aa12.17□□□□□ -0.46
VRK3-215ENST00000599138 ZNF280AP59817 542 aaPredicted RBP12.17□□□□□ -0.46
VRK3-215ENST00000599138 DACT2Q5SW24 774 aa12.17□□□□□ -0.46
VRK3-215ENST00000599138 STRIP1Q5VSL9 837 aa12.17□□□□□ -0.46
VRK3-215ENST00000599138 MEIS3Q99687 375 aa12.17□□□□□ -0.46
VRK3-215ENST00000599138 TNNQ9UQP3 1299 aa12.17□□□□□ -0.46
VRK3-215ENST00000599138 MROH5Q6ZUA9 1318 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 EGFRP00533 1210 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 UBE4AQ14139 1066 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 LRRC24Q50LG9 513 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 ZKSCAN2Q63HK3 967 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 SAMD7Q7Z3H4 446 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 VGLL2Q8N8G2 317 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 FRAT1Q92837 279 aaPredicted RBP12.16□□□□□ -0.46
VRK3-215ENST00000599138 CD209Q9NNX6 404 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 CREBZFQ9NS37 354 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 HDAC5Q9UQL6 1122 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 PCNTO95613 3336 aa12.16□□□□□ -0.46
VRK3-215ENST00000599138 TRPM7Q96QT4 1865 aa12.15□□□□□ -0.46
VRK3-215ENST00000599138 IL1R1P14778 569 aa12.15□□□□□ -0.46
VRK3-215ENST00000599138 PTPN12Q05209 780 aaKnown RBP12.15□□□□□ -0.46
VRK3-215ENST00000599138 KLHDC4Q8TBB5 520 aa12.15□□□□□ -0.46
VRK3-215ENST00000599138 KLRG1Q96E93 195 aa12.15□□□□□ -0.46
VRK3-215ENST00000599138 LRRFIP2Q9Y608 721 aaKnown RBP12.15□□□□□ -0.46
VRK3-215ENST00000599138 EYA2O00167 538 aa12.14□□□□□ -0.47
VRK3-215ENST00000599138 PLIN1O60240 522 aa12.14□□□□□ -0.47
VRK3-215ENST00000599138 GNAI3P08754 354 aa12.14□□□□□ -0.47
VRK3-215ENST00000599138 USP17L8P0C7I0 530 aa12.14□□□□□ -0.47
VRK3-215ENST00000599138 MTX1Q13505 466 aa12.14□□□□□ -0.47
VRK3-215ENST00000599138 TBC1D10BQ4KMP7 808 aaPredicted RBP12.14□□□□□ -0.47
VRK3-215ENST00000599138 TTLL5Q6EMB2 1281 aa12.14□□□□□ -0.47
VRK3-215ENST00000599138 CLUAP1Q96AJ1 413 aa12.14□□□□□ -0.47
VRK3-215ENST00000599138 MXD3Q9BW11 206 aa12.14□□□□□ -0.47
VRK3-215ENST00000599138 FBXO3Q9UK99 471 aa12.14□□□□□ -0.47
VRK3-215ENST00000599138 MYO3BQ8WXR4 1341 aa12.13□□□□□ -0.47
VRK3-215ENST00000599138 TMEM88BA6NKF7 163 aa12.13□□□□□ -0.47
VRK3-215ENST00000599138 CIAO1O76071 339 aa12.13□□□□□ -0.47
VRK3-215ENST00000599138 PDE8BO95263 885 aa12.13□□□□□ -0.47
VRK3-215ENST00000599138 MMP14P50281 582 aa12.13□□□□□ -0.47
VRK3-215ENST00000599138 FMR1Q06787 632 aaKnown RBP eCLIP12.13□□□□□ -0.47
VRK3-215ENST00000599138 KIF4BQ2VIQ3 1234 aa12.13□□□□□ -0.47
VRK3-215ENST00000599138 ATG9AQ7Z3C6 839 aa12.13□□□□□ -0.47
VRK3-215ENST00000599138 ZNF804AQ7Z570 1209 aa12.13□□□□□ -0.47
VRK3-215ENST00000599138 TMEM57Q8N5G2 664 aa12.13□□□□□ -0.47
VRK3-215ENST00000599138 JMYQ8N9B5 988 aa12.13□□□□□ -0.47
VRK3-215ENST00000599138 FAM84BQ96KN1 310 aaPredicted RBP12.13□□□□□ -0.47
VRK3-215ENST00000599138 TRAF5O00463 557 aa12.12□□□□□ -0.47
VRK3-215ENST00000599138 SASH1O94885 1247 aa12.12□□□□□ -0.47
VRK3-215ENST00000599138 RLBP1P12271 317 aa12.12□□□□□ -0.47
VRK3-215ENST00000599138 FGFR2P21802 821 aa12.12□□□□□ -0.47
VRK3-215ENST00000599138 FKBP1AP62942 108 aaKnown RBP12.12□□□□□ -0.47
VRK3-215ENST00000599138 GTF2IP78347 998 aa12.12□□□□□ -0.47
VRK3-215ENST00000599138 METTL24Q5JXM2 366 aa12.12□□□□□ -0.47
VRK3-215ENST00000599138 RBM26Q5T8P6 1007 aaKnown RBP12.12□□□□□ -0.47
VRK3-215ENST00000599138 CST9Q5W186 159 aa12.12□□□□□ -0.47
VRK3-215ENST00000599138 CDC37L1Q7L3B6 337 aa12.12□□□□□ -0.47
VRK3-215ENST00000599138 FBXO33Q7Z6M2 555 aa12.12□□□□□ -0.47
VRK3-215ENST00000599138 TDRD7Q8NHU6 1098 aaKnown RBP12.12□□□□□ -0.47
VRK3-215ENST00000599138 GLIS2Q9BZE0 524 aaPredicted RBP12.12□□□□□ -0.47
VRK3-215ENST00000599138 COPRSQ9NQ92 184 aa12.12□□□□□ -0.47
VRK3-215ENST00000599138 FAM205AQ6ZU69 1335 aa12.11□□□□□ -0.47
VRK3-215ENST00000599138 HIBADHP31937 336 aaKnown RBP12.11□□□□□ -0.47
VRK3-215ENST00000599138 GYG1P46976 350 aa12.11□□□□□ -0.47
VRK3-215ENST00000599138 DZIP1LQ8IYY4 767 aaKnown RBP12.11□□□□□ -0.47
VRK3-215ENST00000599138 CERS5Q8N5B7 392 aa12.11□□□□□ -0.47
VRK3-215ENST00000599138 MYOZ2Q9NPC6 264 aa12.11□□□□□ -0.47
VRK3-215ENST00000599138 CNTNAP1P78357 1384 aa12.1□□□□□ -0.47
VRK3-215ENST00000599138 GNAI2P04899 355 aa12.1□□□□□ -0.47
VRK3-215ENST00000599138 SCARF1Q14162 830 aa12.1□□□□□ -0.47
VRK3-215ENST00000599138 PUM3Q15397 648 aaKnown RBP12.1□□□□□ -0.47
VRK3-215ENST00000599138 FBXW7Q969H0 707 aa12.1□□□□□ -0.47
VRK3-215ENST00000599138 ZBED3Q96IU2 234 aaPredicted RBP12.1□□□□□ -0.47
VRK3-215ENST00000599138 ASTN2O75129 1339 aaPredicted RBP12.1□□□□□ -0.47
VRK3-215ENST00000599138 RASSF10A6NK89 507 aa12.09□□□□□ -0.47
VRK3-215ENST00000599138 SRGAP3O43295 1099 aa12.09□□□□□ -0.47
VRK3-215ENST00000599138 IL15P40933 162 aaPredicted RBP12.09□□□□□ -0.47
VRK3-215ENST00000599138 KRT26Q7Z3Y9 468 aa12.09□□□□□ -0.47
VRK3-215ENST00000599138 USP48Q86UV5 1035 aa12.09□□□□□ -0.47
VRK3-215ENST00000599138 KIAA0825Q8IV33 1275 aa12.09□□□□□ -0.47
VRK3-215ENST00000599138 FTSJ3Q8IY81 847 aaKnown RBP12.09□□□□□ -0.47
VRK3-215ENST00000599138 OGFOD1Q8N543 542 aa12.09□□□□□ -0.47
VRK3-215ENST00000599138 DCPSQ96C86 337 aaKnown RBP12.09□□□□□ -0.47
VRK3-215ENST00000599138 SIL1Q9H173 461 aa12.09□□□□□ -0.47
VRK3-215ENST00000599138 GGA3Q9NZ52 723 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms