RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 ABT1Q9ULW3 272 aaKnown RBP13.36□□□□□ -0.27
LIG1-213ENST00000596672 GRM8O00222 908 aa13.35□□□□□ -0.27
LIG1-213ENST00000596672 RPS12P25398 132 aaKnown RBP13.35□□□□□ -0.27
LIG1-213ENST00000596672 CAPNS2Q96L46 248 aa13.35□□□□□ -0.27
LIG1-213ENST00000596672 PUS3Q9BZE2 481 aaKnown RBP13.35□□□□□ -0.27
LIG1-213ENST00000596672 KIF4BQ2VIQ3 1234 aa13.34□□□□□ -0.27
LIG1-213ENST00000596672 SLC4A10Q6U841 1118 aa13.34□□□□□ -0.27
LIG1-213ENST00000596672 CDC37L1Q7L3B6 337 aa13.34□□□□□ -0.27
LIG1-213ENST00000596672 ANKRD44Q8N8A2 993 aa13.34□□□□□ -0.27
LIG1-213ENST00000596672 ZNF804BA4D1E1 1349 aa13.34□□□□□ -0.27
LIG1-213ENST00000596672 UTYO14607 1347 aa13.34□□□□□ -0.27
LIG1-213ENST00000596672 USP17L3A6NCW0 530 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 USP17L4A6NCW7 530 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 IGHMBP2P38935 993 aaKnown RBP13.33□□□□□ -0.28
LIG1-213ENST00000596672 SCARF1Q14162 830 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 USP17L1Q7RTZ2 530 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 PODNQ7Z5L7 613 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 CERS5Q8N5B7 392 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 AGBL3Q8NEM8 1001 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 ZNF408Q9H9D4 720 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 GGA3Q9NZ52 723 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 LEMD3Q9Y2U8 911 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 PCDHAC2Q9Y5I4 1007 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 AOX1Q06278 1338 aa13.33□□□□□ -0.28
LIG1-213ENST00000596672 ANKRD18BA2A2Z9 1011 aa13.32□□□□□ -0.28
LIG1-213ENST00000596672 ALDH1L1O75891 902 aa13.32□□□□□ -0.28
LIG1-213ENST00000596672 HSPA8P11142 646 aaKnown RBP13.32□□□□□ -0.28
LIG1-213ENST00000596672 NBPF9Q3BBW0 867 aa13.32□□□□□ -0.28
LIG1-213ENST00000596672 KRT26Q7Z3Y9 468 aa13.32□□□□□ -0.28
LIG1-213ENST00000596672 SRCIN1Q9C0H9 1055 aa13.32□□□□□ -0.28
LIG1-213ENST00000596672 E9PSI1 815 aa13.31□□□□□ -0.28
LIG1-213ENST00000596672 USP17L8P0C7I0 530 aa13.31□□□□□ -0.28
LIG1-213ENST00000596672 GRM1Q13255 1194 aa13.31□□□□□ -0.28
LIG1-213ENST00000596672 ANGEL2Q5VTE6 544 aaKnown RBP13.31□□□□□ -0.28
LIG1-213ENST00000596672 PRAMEF18Q5VWM3 479 aa13.31□□□□□ -0.28
LIG1-213ENST00000596672 ZBED3Q96IU2 234 aaPredicted RBP13.31□□□□□ -0.28
LIG1-213ENST00000596672 USP44Q9H0E7 712 aa13.31□□□□□ -0.28
LIG1-213ENST00000596672 MYOZ2Q9NPC6 264 aa13.31□□□□□ -0.28
LIG1-213ENST00000596672 CASP8AP2Q9UKL3 1982 aa13.31□□□□□ -0.28
LIG1-213ENST00000596672 FAM155AB1AL88 458 aaPredicted RBP13.3□□□□□ -0.28
LIG1-213ENST00000596672 LBX1P52954 281 aa13.3□□□□□ -0.28
LIG1-213ENST00000596672 IFIT5Q13325 482 aaKnown RBP13.3□□□□□ -0.28
LIG1-213ENST00000596672 DIEXFQ68CQ4 756 aaKnown RBP13.3□□□□□ -0.28
LIG1-213ENST00000596672 C15orf52Q6ZUT6 534 aaKnown RBP13.3□□□□□ -0.28
LIG1-213ENST00000596672 MOB2Q70IA6 237 aa13.3□□□□□ -0.28
LIG1-213ENST00000596672 MPHOSPH8Q99549 860 aa13.3□□□□□ -0.28
LIG1-213ENST00000596672 ANKRD2Q9GZV1 360 aa13.3□□□□□ -0.28
LIG1-213ENST00000596672 COA1Q9GZY4 146 aa13.3□□□□□ -0.28
LIG1-213ENST00000596672 BICC1Q9H694 974 aaKnown RBP13.3□□□□□ -0.28
LIG1-213ENST00000596672 CD209Q9NNX6 404 aa13.3□□□□□ -0.28
LIG1-213ENST00000596672 TSKSQ9UJT2 592 aa13.3□□□□□ -0.28
LIG1-213ENST00000596672 CHMP3Q9Y3E7 222 aa13.3□□□□□ -0.28
LIG1-213ENST00000596672 G3V3G9 751 aa13.29□□□□□ -0.28
LIG1-213ENST00000596672 CCER2I3L3R5 266 aa13.29□□□□□ -0.28
LIG1-213ENST00000596672 GTF2IP78347 998 aa13.29□□□□□ -0.28
LIG1-213ENST00000596672 RABL6Q3YEC7 729 aaPredicted RBP13.29□□□□□ -0.28
LIG1-213ENST00000596672 LRRC24Q50LG9 513 aa13.29□□□□□ -0.28
LIG1-213ENST00000596672 DCAF8Q5TAQ9 597 aa13.29□□□□□ -0.28
LIG1-213ENST00000596672 STRIP1Q5VSL9 837 aa13.29□□□□□ -0.28
LIG1-213ENST00000596672 KLHDC4Q8TBB5 520 aa13.29□□□□□ -0.28
LIG1-213ENST00000596672 CDCA5Q96FF9 252 aa13.29□□□□□ -0.28
LIG1-213ENST00000596672 C9orf78Q9NZ63 289 aaPredicted RBP13.29□□□□□ -0.28
LIG1-213ENST00000596672 JAG2Q9Y219 1238 aa13.29□□□□□ -0.28
LIG1-213ENST00000596672 RIPOR2Q9Y4F9 1068 aa13.29□□□□□ -0.28
LIG1-213ENST00000596672 WNT10BO00744 389 aa13.28□□□□□ -0.28
LIG1-213ENST00000596672 SASH1O94885 1247 aa13.28□□□□□ -0.28
LIG1-213ENST00000596672 GRIK5Q16478 980 aa13.28□□□□□ -0.28
LIG1-213ENST00000596672 TTLL5Q6EMB2 1281 aa13.28□□□□□ -0.28
LIG1-213ENST00000596672 PAXIP1Q6ZW49 1069 aaPredicted RBP13.28□□□□□ -0.28
LIG1-213ENST00000596672 TNS4Q8IZW8 715 aa13.28□□□□□ -0.28
LIG1-213ENST00000596672 TNNQ9UQP3 1299 aa13.28□□□□□ -0.28
LIG1-213ENST00000596672 PLIN1O60240 522 aa13.27□□□□□ -0.29
LIG1-213ENST00000596672 IL1R1P14778 569 aa13.27□□□□□ -0.29
LIG1-213ENST00000596672 RFX5P48382 616 aaPredicted RBP13.27□□□□□ -0.29
LIG1-213ENST00000596672 HUNKP57058 714 aa13.27□□□□□ -0.29
LIG1-213ENST00000596672 LDHAL6AQ6ZMR3 332 aa13.27□□□□□ -0.29
LIG1-213ENST00000596672 KIAA0825Q8IV33 1275 aa13.27□□□□□ -0.29
LIG1-213ENST00000596672 VGLL2Q8N8G2 317 aa13.27□□□□□ -0.29
LIG1-213ENST00000596672 FBXW7Q969H0 707 aa13.27□□□□□ -0.29
LIG1-213ENST00000596672 DCPSQ96C86 337 aaKnown RBP13.27□□□□□ -0.29
LIG1-213ENST00000596672 HHIPL1Q96JK4 782 aa13.27□□□□□ -0.29
LIG1-213ENST00000596672 GBA2Q9HCG7 927 aaPredicted RBP13.27□□□□□ -0.29
LIG1-213ENST00000596672 PRDM10Q9NQV6 1147 aa13.27□□□□□ -0.29
LIG1-213ENST00000596672 GYG1P46976 350 aa13.26□□□□□ -0.29
LIG1-213ENST00000596672 CTCFP49711 727 aaPredicted RBP13.26□□□□□ -0.29
LIG1-213ENST00000596672 MIER1Q8N108 512 aa13.26□□□□□ -0.29
LIG1-213ENST00000596672 FAM84BQ96KN1 310 aaPredicted RBP13.26□□□□□ -0.29
LIG1-213ENST00000596672 PTPRCP08575 1304 aa13.25□□□□□ -0.29
LIG1-213ENST00000596672 CAPN15O75808 1086 aa13.25□□□□□ -0.29
LIG1-213ENST00000596672 MAP2K2P36507 400 aa13.25□□□□□ -0.29
LIG1-213ENST00000596672 CCDC57Q2TAC2 916 aa13.25□□□□□ -0.29
LIG1-213ENST00000596672 ALDH1L2Q3SY69 923 aa13.25□□□□□ -0.29
LIG1-213ENST00000596672 NOB1Q9ULX3 412 aaKnown RBP13.25□□□□□ -0.29
LIG1-213ENST00000596672 FZD1Q9UP38 647 aa13.25□□□□□ -0.29
LIG1-213ENST00000596672 ECE1P42892 770 aa13.24□□□□□ -0.29
LIG1-213ENST00000596672 KCNJ4P48050 445 aa13.24□□□□□ -0.29
LIG1-213ENST00000596672 RARSP54136 660 aaKnown RBP13.24□□□□□ -0.29
LIG1-213ENST00000596672 MAP2K1Q02750 393 aaPredicted RBP13.24□□□□□ -0.29
LIG1-213ENST00000596672 RGMBQ6NW40 437 aa13.24□□□□□ -0.29
LIG1-213ENST00000596672 SULF1Q8IWU6 871 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms