RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 DBNDD1Q9H9R9 158 aa13.11□□□□□ -0.31
LIG1-210ENST00000596332 GPR108Q9NPR9 543 aa13.11□□□□□ -0.31
LIG1-210ENST00000596332 DICER1Q9UPY3 1922 aaKnown RBP13.11□□□□□ -0.31
LIG1-210ENST00000596332 ZNF541Q9H0D2 1346 aa13.11□□□□□ -0.31
LIG1-210ENST00000596332 POTECB2RU33 542 aa13.1□□□□□ -0.31
LIG1-210ENST00000596332 ZBTB22O15209 634 aa13.1□□□□□ -0.31
LIG1-210ENST00000596332 IL1R1P14778 569 aa13.1□□□□□ -0.31
LIG1-210ENST00000596332 BCAMP50895 628 aa13.1□□□□□ -0.31
LIG1-210ENST00000596332 CXCL9Q07325 125 aa13.1□□□□□ -0.31
LIG1-210ENST00000596332 PUM3Q15397 648 aaKnown RBP13.1□□□□□ -0.31
LIG1-210ENST00000596332 LARGE2Q8N3Y3 721 aa13.1□□□□□ -0.31
LIG1-210ENST00000596332 TDRD7Q8NHU6 1098 aaKnown RBP13.1□□□□□ -0.31
LIG1-210ENST00000596332 LPIN2Q92539 896 aa13.1□□□□□ -0.31
LIG1-210ENST00000596332 ZC3H12CQ9C0D7 883 aaKnown RBP13.1□□□□□ -0.31
LIG1-210ENST00000596332 TMX4Q9H1E5 349 aaPredicted RBP13.1□□□□□ -0.31
LIG1-210ENST00000596332 CD209Q9NNX6 404 aa13.1□□□□□ -0.31
LIG1-210ENST00000596332 ZNF646O15015 1829 aaPredicted RBP13.1□□□□□ -0.31
LIG1-210ENST00000596332 CHD4Q14839 1912 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 SCN9AQ15858 1988 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 A0A1B0GUL7 405 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 ECE2O60344 883 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 HMMRO75330 724 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 ATP2B3Q16720 1220 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 TNNI3KQ59H18 835 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 SMC5Q8IY18 1101 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 EYA3Q99504 573 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 TLR7Q9NYK1 1049 aaKnown RBP13.09□□□□□ -0.31
LIG1-210ENST00000596332 ZNRF3Q9ULT6 936 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 FPGT-TNNI3KV9GXZ4 949 aa13.09□□□□□ -0.31
LIG1-210ENST00000596332 ZNF609O15014 1411 aa13.08□□□□□ -0.32
LIG1-210ENST00000596332 RAB11FIP3O75154 756 aa13.08□□□□□ -0.32
LIG1-210ENST00000596332 XAGE2Q96GT9 111 aa13.08□□□□□ -0.32
LIG1-210ENST00000596332 DBNDD2Q9BQY9 259 aa13.08□□□□□ -0.32
LIG1-210ENST00000596332 COA1Q9GZY4 146 aa13.08□□□□□ -0.32
LIG1-210ENST00000596332 IL1RAPL2Q9NP60 686 aa13.08□□□□□ -0.32
LIG1-210ENST00000596332 DCAF8L1A6NGE4 600 aa13.07□□□□□ -0.32
LIG1-210ENST00000596332 SMARCA5O60264 1052 aaPredicted RBP13.07□□□□□ -0.32
LIG1-210ENST00000596332 DDNO94850 711 aaPredicted RBP13.07□□□□□ -0.32
LIG1-210ENST00000596332 VIL1P09327 827 aaKnown RBP13.07□□□□□ -0.32
LIG1-210ENST00000596332 HIBADHP31937 336 aaKnown RBP13.07□□□□□ -0.32
LIG1-210ENST00000596332 PHKA1P46020 1223 aa13.07□□□□□ -0.32
LIG1-210ENST00000596332 PODNQ7Z5L7 613 aa13.07□□□□□ -0.32
LIG1-210ENST00000596332 C16orf71Q8IYS4 520 aaPredicted RBP13.07□□□□□ -0.32
LIG1-210ENST00000596332 GMLQ99445 158 aa13.07□□□□□ -0.32
LIG1-210ENST00000596332 MXD3Q9BW11 206 aa13.07□□□□□ -0.32
LIG1-210ENST00000596332 DBNLQ9UJU6 430 aaKnown RBP13.07□□□□□ -0.32
LIG1-210ENST00000596332 COL1A1P02452 1464 aaPredicted RBP13.07□□□□□ -0.32
LIG1-210ENST00000596332 TIAM2Q8IVF5 1701 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 GLTPD2A6NH11 291 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 RAD17O75943 681 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 DACT2Q5SW24 774 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 CCDC102BQ68D86 513 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 NIM1KQ8IY84 436 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 CERS5Q8N5B7 392 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 JDP2Q8WYK2 163 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 KIF1BPQ96EK5 621 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 CCDC8Q9H0W5 538 aaPredicted RBP13.06□□□□□ -0.32
LIG1-210ENST00000596332 AKAP2Q9Y2D5 859 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 SALL3Q9BXA9 1300 aa13.06□□□□□ -0.32
LIG1-210ENST00000596332 ZC3H4Q9UPT8 1303 aaKnown RBP13.06□□□□□ -0.32
LIG1-210ENST00000596332 ARAP2Q8WZ64 1704 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 APBB1O00213 710 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 PSMD14O00487 310 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 IFIT1P09914 478 aaKnown RBP13.05□□□□□ -0.32
LIG1-210ENST00000596332 SLC5A1P13866 664 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 KCNJ4P48050 445 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 SCARF1Q14162 830 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 GRIK5Q16478 980 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 HSP90AB4PQ58FF6 505 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 OTUD7AQ8TE49 926 aaPredicted RBP13.05□□□□□ -0.32
LIG1-210ENST00000596332 CNKSR2Q8WXI2 1034 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 FAM205AQ6ZU69 1335 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 KDM2BQ8NHM5 1336 aa13.05□□□□□ -0.32
LIG1-210ENST00000596332 SHTN1A0MZ66 631 aa13.04□□□□□ -0.32
LIG1-210ENST00000596332 ERC1Q8IUD2 1116 aa13.04□□□□□ -0.32
LIG1-210ENST00000596332 NEUROD6Q96NK8 337 aa13.04□□□□□ -0.32
LIG1-210ENST00000596332 LRRCC1Q9C099 1032 aa13.04□□□□□ -0.32
LIG1-210ENST00000596332 RWDD1Q9H446 243 aaPredicted RBP13.04□□□□□ -0.32
LIG1-210ENST00000596332 IQSEC3Q9UPP2 1182 aaPredicted RBP13.04□□□□□ -0.32
LIG1-210ENST00000596332 ZBTB12Q9Y330 459 aaPredicted RBP13.04□□□□□ -0.32
LIG1-210ENST00000596332 ARID4AP29374 1257 aaPredicted RBP13.03□□□□□ -0.32
LIG1-210ENST00000596332 SCNN1DP51172 638 aa13.03□□□□□ -0.32
LIG1-210ENST00000596332 GTF2IP78347 998 aa13.03□□□□□ -0.32
LIG1-210ENST00000596332 OS9Q13438 667 aaPredicted RBP13.03□□□□□ -0.32
LIG1-210ENST00000596332 RASGRF1Q13972 1273 aa13.03□□□□□ -0.32
LIG1-210ENST00000596332 STRIP1Q5VSL9 837 aa13.03□□□□□ -0.32
LIG1-210ENST00000596332 CIAPIN1Q6FI81 312 aa13.03□□□□□ -0.32
LIG1-210ENST00000596332 PI16Q6UXB8 463 aa13.03□□□□□ -0.32
LIG1-210ENST00000596332 ZNF804AQ7Z570 1209 aa13.03□□□□□ -0.32
LIG1-210ENST00000596332 GPC2Q8N158 579 aa13.03□□□□□ -0.32
LIG1-210ENST00000596332 GCC1Q96CN9 775 aa13.03□□□□□ -0.32
LIG1-210ENST00000596332 L3MBTL3Q96JM7 780 aaPredicted RBP13.03□□□□□ -0.32
LIG1-210ENST00000596332 ZNF512BQ96KM6 892 aaPredicted RBP13.03□□□□□ -0.32
LIG1-210ENST00000596332 PSME4Q14997 1843 aa13.02□□□□□ -0.32
LIG1-210ENST00000596332 USP17L3A6NCW0 530 aa13.02□□□□□ -0.33
LIG1-210ENST00000596332 USP17L4A6NCW7 530 aa13.02□□□□□ -0.33
LIG1-210ENST00000596332 MCAMP43121 646 aa13.02□□□□□ -0.33
LIG1-210ENST00000596332 TTLL5Q6EMB2 1281 aa13.02□□□□□ -0.33
LIG1-210ENST00000596332 USP17L1Q7RTZ2 530 aa13.02□□□□□ -0.33
LIG1-210ENST00000596332 AACSQ86V21 672 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms