RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 LRRFIP2Q9Y608 721 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-206ENST00000595523 G3V3G9 751 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 ITGBL1O95965 494 aaPredicted RBP13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 RLBP1P12271 317 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 APLP1P51693 650 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 HIRAP54198 1017 aaPredicted RBP13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 DCAF8Q5TAQ9 597 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 USP50Q70EL3 339 aaPredicted RBP13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 PODNQ7Z5L7 613 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 MICALL2Q8IY33 904 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 TMEM57Q8N5G2 664 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 VGLL2Q8N8G2 317 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 TRPM4Q8TD43 1214 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 DPF2Q92785 391 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 COA1Q9GZY4 146 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 CNOT7Q9UIV1 285 aaKnown RBP13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 PASKQ96RG2 1323 aa13.78□□□□□ -0.2
SHKBP1-206ENST00000595523 PLIN1O60240 522 aa13.77□□□□□ -0.21
SHKBP1-206ENST00000595523 EGFRP00533 1210 aa13.77□□□□□ -0.21
SHKBP1-206ENST00000595523 RPS12P25398 132 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-206ENST00000595523 KCNJ4P48050 445 aa13.77□□□□□ -0.21
SHKBP1-206ENST00000595523 PTPN12Q05209 780 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-206ENST00000595523 ECM29Q5VYK3 1845 aa13.77□□□□□ -0.21
SHKBP1-206ENST00000595523 MAP1SQ66K74 1059 aaPredicted RBP13.77□□□□□ -0.21
SHKBP1-206ENST00000595523 RSBN1LQ6PCB5 846 aaPredicted RBP13.77□□□□□ -0.21
SHKBP1-206ENST00000595523 GMLQ99445 158 aa13.77□□□□□ -0.21
SHKBP1-206ENST00000595523 CLEC11AQ9Y240 323 aa13.77□□□□□ -0.21
SHKBP1-206ENST00000595523 MROH5Q6ZUA9 1318 aa13.76□□□□□ -0.21
SHKBP1-206ENST00000595523 USP17L3A6NCW0 530 aa13.76□□□□□ -0.21
SHKBP1-206ENST00000595523 USP17L4A6NCW7 530 aa13.76□□□□□ -0.21
SHKBP1-206ENST00000595523 DACT2Q5SW24 774 aa13.76□□□□□ -0.21
SHKBP1-206ENST00000595523 USP17L1Q7RTZ2 530 aa13.76□□□□□ -0.21
SHKBP1-206ENST00000595523 SAMD7Q7Z3H4 446 aa13.76□□□□□ -0.21
SHKBP1-206ENST00000595523 MXD3Q9BW11 206 aa13.76□□□□□ -0.21
SHKBP1-206ENST00000595523 GNAI3P08754 354 aa13.75□□□□□ -0.21
SHKBP1-206ENST00000595523 UBE4AQ14139 1066 aa13.75□□□□□ -0.21
SHKBP1-206ENST00000595523 ATG9AQ7Z3C6 839 aa13.75□□□□□ -0.21
SHKBP1-206ENST00000595523 CNTROBQ8N137 903 aa13.75□□□□□ -0.21
SHKBP1-206ENST00000595523 CD209Q9NNX6 404 aa13.75□□□□□ -0.21
SHKBP1-206ENST00000595523 PGAP2Q9UHJ9 254 aa13.75□□□□□ -0.21
SHKBP1-206ENST00000595523 EYA2O00167 538 aa13.74□□□□□ -0.21
SHKBP1-206ENST00000595523 IL1R1P14778 569 aa13.74□□□□□ -0.21
SHKBP1-206ENST00000595523 ZNF280AP59817 542 aaPredicted RBP13.74□□□□□ -0.21
SHKBP1-206ENST00000595523 FMR1Q06787 632 aaKnown RBP eCLIP13.74□□□□□ -0.21
SHKBP1-206ENST00000595523 MTX1Q13505 466 aa13.74□□□□□ -0.21
SHKBP1-206ENST00000595523 TBC1D10BQ4KMP7 808 aaPredicted RBP13.74□□□□□ -0.21
SHKBP1-206ENST00000595523 STRIP1Q5VSL9 837 aa13.74□□□□□ -0.21
SHKBP1-206ENST00000595523 DZIP1LQ8IYY4 767 aaKnown RBP13.74□□□□□ -0.21
SHKBP1-206ENST00000595523 DNAJC5GQ8N7S2 189 aa13.74□□□□□ -0.21
SHKBP1-206ENST00000595523 AGBL3Q8NEM8 1001 aa13.74□□□□□ -0.21
SHKBP1-206ENST00000595523 H7C1D1 291 aa13.73□□□□□ -0.21
SHKBP1-206ENST00000595523 PDE8BO95263 885 aa13.73□□□□□ -0.21
SHKBP1-206ENST00000595523 GYG1P46976 350 aa13.73□□□□□ -0.21
SHKBP1-206ENST00000595523 METTL24Q5JXM2 366 aa13.73□□□□□ -0.21
SHKBP1-206ENST00000595523 ZNF804AQ7Z570 1209 aa13.73□□□□□ -0.21
SHKBP1-206ENST00000595523 FAM84BQ96KN1 310 aaPredicted RBP13.73□□□□□ -0.21
SHKBP1-206ENST00000595523 SIL1Q9H173 461 aa13.73□□□□□ -0.21
SHKBP1-206ENST00000595523 PA2G4Q9UQ80 394 aaKnown RBP13.73□□□□□ -0.21
SHKBP1-206ENST00000595523 HDAC5Q9UQL6 1122 aa13.73□□□□□ -0.21
SHKBP1-206ENST00000595523 TRAF5O00463 557 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 CIAO1O76071 339 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 GNAI2P04899 355 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 FGFR2P21802 821 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 GTF2IP78347 998 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 TTLL5Q6EMB2 1281 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 FTSJ3Q8IY81 847 aaKnown RBP13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 CERS5Q8N5B7 392 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 PANK1Q8TE04 598 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 ZC3H15Q8WU90 426 aaKnown RBP13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 FBXW7Q969H0 707 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 COPRSQ9NQ92 184 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 RCAN3Q9UKA8 241 aa13.72□□□□□ -0.21
SHKBP1-206ENST00000595523 ASTN2O75129 1339 aaPredicted RBP13.71□□□□□ -0.21
SHKBP1-206ENST00000595523 PNMA6EA0A0J9YXQ4 647 aa13.71□□□□□ -0.21
SHKBP1-206ENST00000595523 SRGAP3O43295 1099 aa13.71□□□□□ -0.21
SHKBP1-206ENST00000595523 USP17L8P0C7I0 530 aa13.71□□□□□ -0.21
SHKBP1-206ENST00000595523 KIF4BQ2VIQ3 1234 aa13.71□□□□□ -0.21
SHKBP1-206ENST00000595523 RBM26Q5T8P6 1007 aaKnown RBP13.71□□□□□ -0.21
SHKBP1-206ENST00000595523 ITPRIPQ8IWB1 547 aa13.71□□□□□ -0.21
SHKBP1-206ENST00000595523 TDRD7Q8NHU6 1098 aaKnown RBP13.71□□□□□ -0.21
SHKBP1-206ENST00000595523 FBXO3Q9UK99 471 aa13.71□□□□□ -0.21
SHKBP1-206ENST00000595523 MYO3BQ8WXR4 1341 aa13.7□□□□□ -0.22
SHKBP1-206ENST00000595523 ZBTB7BO15156 539 aaPredicted RBP13.7□□□□□ -0.22
SHKBP1-206ENST00000595523 PUM3Q15397 648 aaKnown RBP13.7□□□□□ -0.22
SHKBP1-206ENST00000595523 FBXO33Q7Z6M2 555 aa13.7□□□□□ -0.22
SHKBP1-206ENST00000595523 GLIS2Q9BZE0 524 aaPredicted RBP13.7□□□□□ -0.22
SHKBP1-206ENST00000595523 C1orf115Q9H7X2 142 aa13.7□□□□□ -0.22
SHKBP1-206ENST00000595523 MYOZ2Q9NPC6 264 aa13.7□□□□□ -0.22
SHKBP1-206ENST00000595523 CREBZFQ9NS37 354 aa13.7□□□□□ -0.22
SHKBP1-206ENST00000595523 JAG2Q9Y219 1238 aa13.7□□□□□ -0.22
SHKBP1-206ENST00000595523 FAM205AQ6ZU69 1335 aa13.69□□□□□ -0.22
SHKBP1-206ENST00000595523 HIBADHP31937 336 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-206ENST00000595523 DLK2Q6UY11 383 aa13.69□□□□□ -0.22
SHKBP1-206ENST00000595523 KIAA0825Q8IV33 1275 aa13.69□□□□□ -0.22
SHKBP1-206ENST00000595523 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-206ENST00000595523 COL1A1P02452 1464 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-206ENST00000595523 TMEM88BA6NKF7 163 aa13.68□□□□□ -0.22
SHKBP1-206ENST00000595523 SASH1O94885 1247 aa13.68□□□□□ -0.22
SHKBP1-206ENST00000595523 IL15P40933 162 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-206ENST00000595523 CST9Q5W186 159 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms