RNA–Protein interactions for RNA: ENST00000594092.5

VRK3-207, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK3, Length 1,831 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-207ENST00000594092 SGSM2O43147 1006 aa18.38■□□□□ 0.53
VRK3-207ENST00000594092 NPR1P16066 1061 aa18.38■□□□□ 0.53
VRK3-207ENST00000594092 ZAP70P43403 619 aa18.38■□□□□ 0.53
VRK3-207ENST00000594092 BCAMP50895 628 aa18.38■□□□□ 0.53
VRK3-207ENST00000594092 FKBP4Q02790 459 aaKnown RBP eCLIP18.38■□□□□ 0.53
VRK3-207ENST00000594092 CWC27Q6UX04 472 aaKnown RBP18.38■□□□□ 0.53
VRK3-207ENST00000594092 PI16Q6UXB8 463 aa18.38■□□□□ 0.53
VRK3-207ENST00000594092 USP26Q9BXU7 913 aa18.38■□□□□ 0.53
VRK3-207ENST00000594092 ANTXR1Q9H6X2 564 aa18.38■□□□□ 0.53
VRK3-207ENST00000594092 KCNJ4P48050 445 aa18.37■□□□□ 0.53
VRK3-207ENST00000594092 RBM25P49756 843 aaKnown RBP18.37■□□□□ 0.53
VRK3-207ENST00000594092 RUFY2Q8WXA3 655 aa18.37■□□□□ 0.53
VRK3-207ENST00000594092 MASTLQ96GX5 879 aa18.37■□□□□ 0.53
VRK3-207ENST00000594092 NMIQ13287 307 aaPredicted RBP18.36■□□□□ 0.53
VRK3-207ENST00000594092 FAM227BQ96M60 508 aa18.36■□□□□ 0.53
VRK3-207ENST00000594092 ANKIB1Q9P2G1 1089 aa18.36■□□□□ 0.53
VRK3-207ENST00000594092 ZNF804BA4D1E1 1349 aa18.36■□□□□ 0.53
VRK3-207ENST00000594092 XDHP47989 1333 aa18.36■□□□□ 0.53
VRK3-207ENST00000594092 PPEF1O14829 653 aaPredicted RBP18.35■□□□□ 0.53
VRK3-207ENST00000594092 GYG1P46976 350 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 TMC4Q7Z404 712 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 TICAM2Q86XR7 235 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 C2CD5Q86YS7 1000 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 HMG20BQ9P0W2 317 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 A0A0D9SFI3 127 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 KLRK1P26718 216 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 ALDH1B1P30837 517 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 GPSM2P81274 684 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 RASGRF1Q13972 1273 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 FAM84BQ96KN1 310 aaPredicted RBP18.35■□□□□ 0.53
VRK3-207ENST00000594092 ANO2Q9NQ90 1003 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 LEMD3Q9Y2U8 911 aa18.35■□□□□ 0.53
VRK3-207ENST00000594092 IRS2Q9Y4H2 1338 aa18.34■□□□□ 0.53
VRK3-207ENST00000594092 CHGBP05060 677 aa18.34■□□□□ 0.53
VRK3-207ENST00000594092 CYP2E1P05181 493 aaPredicted RBP18.34■□□□□ 0.53
VRK3-207ENST00000594092 CAVIN4Q5BKX8 364 aa18.34■□□□□ 0.53
VRK3-207ENST00000594092 FBXO33Q7Z6M2 555 aa18.34■□□□□ 0.53
VRK3-207ENST00000594092 SPATA5Q8NB90 893 aa18.34■□□□□ 0.53
VRK3-207ENST00000594092 LRRC37AA6NMS7 1700 aa18.34■□□□□ 0.53
VRK3-207ENST00000594092 RAD50Q92878 1312 aa18.33■□□□□ 0.53
VRK3-207ENST00000594092 H0YIN7 160 aa18.33■□□□□ 0.53
VRK3-207ENST00000594092 SP8Q8IXZ3 490 aa18.33■□□□□ 0.53
VRK3-207ENST00000594092 C10orf71Q711Q0 1435 aa18.33■□□□□ 0.52
VRK3-207ENST00000594092 ZNF622Q969S3 477 aaKnown RBP eCLIP18.33■□□□□ 0.52
VRK3-207ENST00000594092 GNL3LQ9NVN8 582 aaKnown RBP18.33■□□□□ 0.52
VRK3-207ENST00000594092 DAXXQ9UER7 740 aaPredicted RBP18.33■□□□□ 0.52
VRK3-207ENST00000594092 NSFL1CQ9UNZ2 370 aaKnown RBP18.33■□□□□ 0.52
VRK3-207ENST00000594092 ATP6V0A2Q9Y487 856 aa18.33■□□□□ 0.52
VRK3-207ENST00000594092 ZBTB7AO95365 584 aa18.32■□□□□ 0.52
VRK3-207ENST00000594092 R3HDM1Q15032 1099 aaKnown RBP18.32■□□□□ 0.52
VRK3-207ENST00000594092 TTF1Q15361 905 aaPredicted RBP18.32■□□□□ 0.52
VRK3-207ENST00000594092 STYK1Q6J9G0 422 aa18.32■□□□□ 0.52
VRK3-207ENST00000594092 TXNRD3Q86VQ6 643 aa18.32■□□□□ 0.52
VRK3-207ENST00000594092 VPS37DQ86XT2 251 aa18.32■□□□□ 0.52
VRK3-207ENST00000594092 LSG1Q9H089 658 aaKnown RBP18.32■□□□□ 0.52
VRK3-207ENST00000594092 PIH1D3Q9NQM4 214 aaKnown RBP18.32■□□□□ 0.52
VRK3-207ENST00000594092 PODXL2Q9NZ53 605 aa18.32■□□□□ 0.52
VRK3-207ENST00000594092 RNF113AO15541 343 aaKnown RBP18.31■□□□□ 0.52
VRK3-207ENST00000594092 EPB41L2O43491 1005 aaKnown RBP18.31■□□□□ 0.52
VRK3-207ENST00000594092 ATP2B4P23634 1241 aa18.31■□□□□ 0.52
VRK3-207ENST00000594092 CHRNA5P30532 468 aa18.31■□□□□ 0.52
VRK3-207ENST00000594092 GGA1Q9UJY5 639 aa18.31■□□□□ 0.52
VRK3-207ENST00000594092 IQSEC3Q9UPP2 1182 aaPredicted RBP18.31■□□□□ 0.52
VRK3-207ENST00000594092 MED23Q9ULK4 1368 aa18.31■□□□□ 0.52
VRK3-207ENST00000594092 HIBADHP31937 336 aaKnown RBP18.3■□□□□ 0.52
VRK3-207ENST00000594092 LRRFIP1Q32MZ4 808 aaKnown RBP18.3■□□□□ 0.52
VRK3-207ENST00000594092 SLFNL1Q499Z3 407 aa18.3■□□□□ 0.52
VRK3-207ENST00000594092 KIAA1211Q6ZU35 1233 aa18.3■□□□□ 0.52
VRK3-207ENST00000594092 UFL1O94874 794 aa18.3■□□□□ 0.52
VRK3-207ENST00000594092 BECN1Q14457 450 aa18.3■□□□□ 0.52
VRK3-207ENST00000594092 ZMYM1Q5SVZ6 1142 aa18.3■□□□□ 0.52
VRK3-207ENST00000594092 C15orf52Q6ZUT6 534 aaKnown RBP18.3■□□□□ 0.52
VRK3-207ENST00000594092 ZNF589Q86UQ0 364 aaPredicted RBP18.3■□□□□ 0.52
VRK3-207ENST00000594092 KIF2CQ99661 725 aa18.3■□□□□ 0.52
VRK3-207ENST00000594092 MTFR1LQ9H019 292 aa18.3■□□□□ 0.52
VRK3-207ENST00000594092 LTBP1Q14766 1721 aa18.3■□□□□ 0.52
VRK3-207ENST00000594092 COL1A1P02452 1464 aaPredicted RBP18.29■□□□□ 0.52
VRK3-207ENST00000594092 ZFYP08048 801 aaPredicted RBP18.29■□□□□ 0.52
VRK3-207ENST00000594092 ERICH6Q7L0X2 663 aa18.29■□□□□ 0.52
VRK3-207ENST00000594092 SEC62Q99442 399 aaKnown RBP18.29■□□□□ 0.52
VRK3-207ENST00000594092 ATF5Q9Y2D1 282 aaPredicted RBP18.29■□□□□ 0.52
VRK3-207ENST00000594092 PTH1RQ03431 593 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 MCMDC2Q4G0Z9 681 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 TBC1D16Q8TBP0 767 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 GPR101Q96P66 508 aaPredicted RBP18.28■□□□□ 0.52
VRK3-207ENST00000594092 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.28■□□□□ 0.522e-7■■■□□ 18.9
VRK3-207ENST00000594092 HELLSQ9NRZ9 838 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 POLLQ9UGP5 575 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 DENND2AQ9ULE3 1009 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 MYO5AQ9Y4I1 1855 aaKnown RBP18.28■□□□□ 0.52
VRK3-207ENST00000594092 MYH7P12883 1935 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 SEMA3EO15041 775 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 OLFM4Q6UX06 510 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 CNKSR1Q969H4 720 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 CACNA1SQ13698 1873 aa18.28■□□□□ 0.52
VRK3-207ENST00000594092 CCDC171Q6TFL3 1326 aa18.27■□□□□ 0.52
VRK3-207ENST00000594092 ZBTB22O15209 634 aa18.27■□□□□ 0.52
VRK3-207ENST00000594092 IDH1O75874 414 aaKnown RBP18.27■□□□□ 0.52
VRK3-207ENST00000594092 PRPF40BQ6NWY9 871 aaKnown RBP18.27■□□□□ 0.52
VRK3-207ENST00000594092 CCDC129Q6ZRS4 1044 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms