RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 METTL24Q5JXM2 366 aa18.17■□□□□ 0.5
VRK3-206ENST00000594090 SMC1BQ8NDV3 1235 aa18.17■□□□□ 0.5
VRK3-206ENST00000594090 COA1Q9GZY4 146 aa18.17■□□□□ 0.5
VRK3-206ENST00000594090 EYA2O00167 538 aa18.16■□□□□ 0.5
VRK3-206ENST00000594090 ZBTB7BO15156 539 aaPredicted RBP18.16■□□□□ 0.5
VRK3-206ENST00000594090 POTEIP0CG38 1075 aa18.16■□□□□ 0.5
VRK3-206ENST00000594090 POTEJP0CG39 1038 aa18.16■□□□□ 0.5
VRK3-206ENST00000594090 EPS15P42566 896 aa18.16■□□□□ 0.5
VRK3-206ENST00000594090 FSTL1Q12841 308 aa18.16■□□□□ 0.5
VRK3-206ENST00000594090 UBE4AQ14139 1066 aa18.16■□□□□ 0.5
VRK3-206ENST00000594090 VGLL2Q8N8G2 317 aa18.16■□□□□ 0.5
VRK3-206ENST00000594090 ZBTB12Q9Y330 459 aaPredicted RBP18.16■□□□□ 0.5
VRK3-206ENST00000594090 SRGAP3O43295 1099 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 VIL1P09327 827 aaKnown RBP18.15■□□□□ 0.5
VRK3-206ENST00000594090 LDHDQ86WU2 507 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 SIL1Q9H173 461 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 FBXO3Q9UK99 471 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 PA2G4Q9UQ80 394 aaKnown RBP18.15■□□□□ 0.5
VRK3-206ENST00000594090 USP17L3A6NCW0 530 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 USP17L4A6NCW7 530 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 CIAO1O76071 339 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 RPS12P25398 132 aaKnown RBP18.15■□□□□ 0.5
VRK3-206ENST00000594090 EAPPQ56P03 285 aaPredicted RBP18.15■□□□□ 0.5
VRK3-206ENST00000594090 USP17L1Q7RTZ2 530 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 ATG9AQ7Z3C6 839 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 ZNF804AQ7Z570 1209 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 PNMA8AQ86V59 439 aaPredicted RBP18.15■□□□□ 0.5
VRK3-206ENST00000594090 DPF2Q92785 391 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 COPRSQ9NQ92 184 aa18.15■□□□□ 0.5
VRK3-206ENST00000594090 PDE8BO95263 885 aa18.14■□□□□ 0.49
VRK3-206ENST00000594090 RSBN1LQ6PCB5 846 aaPredicted RBP18.14■□□□□ 0.49
VRK3-206ENST00000594090 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.14■□□□□ 0.49
VRK3-206ENST00000594090 C1orf115Q9H7X2 142 aa18.14■□□□□ 0.49
VRK3-206ENST00000594090 CD209Q9NNX6 404 aa18.14■□□□□ 0.49
VRK3-206ENST00000594090 ADARB2Q9NS39 739 aaKnown RBP18.14■□□□□ 0.49
VRK3-206ENST00000594090 SHTN1A0MZ66 631 aa18.13■□□□□ 0.49
VRK3-206ENST00000594090 MVPQ14764 893 aaKnown RBP18.13■□□□□ 0.49
VRK3-206ENST00000594090 MICALL2Q8IY33 904 aa18.13■□□□□ 0.49
VRK3-206ENST00000594090 CNOT7Q9UIV1 285 aaKnown RBP18.13■□□□□ 0.49
VRK3-206ENST00000594090 PNMA6EA0A0J9YXQ4 647 aa18.12■□□□□ 0.49
VRK3-206ENST00000594090 PUM3Q15397 648 aaKnown RBP18.12■□□□□ 0.49
VRK3-206ENST00000594090 CHADLQ6NUI6 762 aa18.12■□□□□ 0.49
VRK3-206ENST00000594090 USP50Q70EL3 339 aaPredicted RBP18.12■□□□□ 0.49
VRK3-206ENST00000594090 IL1R1P14778 569 aa18.11■□□□□ 0.49
VRK3-206ENST00000594090 FGFR2P21802 821 aa18.11■□□□□ 0.49
VRK3-206ENST00000594090 IL15P40933 162 aaPredicted RBP18.11■□□□□ 0.49
VRK3-206ENST00000594090 DACT2Q5SW24 774 aa18.11■□□□□ 0.49
VRK3-206ENST00000594090 STRIP1Q5VSL9 837 aa18.11■□□□□ 0.49
VRK3-206ENST00000594090 AGBL3Q8NEM8 1001 aa18.11■□□□□ 0.49
VRK3-206ENST00000594090 FBXW7Q969H0 707 aa18.11■□□□□ 0.49
VRK3-206ENST00000594090 DDX19BQ9UMR2 479 aa18.11■□□□□ 0.49
VRK3-206ENST00000594090 COG6Q9Y2V7 657 aa18.11■□□□□ 0.49
VRK3-206ENST00000594090 H7C1D1 291 aa18.1■□□□□ 0.49
VRK3-206ENST00000594090 HSPA6P17066 643 aa18.1■□□□□ 0.49
VRK3-206ENST00000594090 GYG1P46976 350 aa18.1■□□□□ 0.49
VRK3-206ENST00000594090 PDE3AQ14432 1141 aa18.1■□□□□ 0.49
VRK3-206ENST00000594090 C20orf194Q5TEA3 1177 aa18.1■□□□□ 0.49
VRK3-206ENST00000594090 FAM84BQ96KN1 310 aaPredicted RBP18.1■□□□□ 0.49
VRK3-206ENST00000594090 GMLQ99445 158 aa18.1■□□□□ 0.49
VRK3-206ENST00000594090 CLEC11AQ9Y240 323 aa18.1■□□□□ 0.49
VRK3-206ENST00000594090 HIBADHP31937 336 aaKnown RBP18.09■□□□□ 0.49
VRK3-206ENST00000594090 GTF2IP78347 998 aa18.09■□□□□ 0.49
VRK3-206ENST00000594090 TTLL5Q6EMB2 1281 aa18.09■□□□□ 0.49
VRK3-206ENST00000594090 TRPM4Q8TD43 1214 aa18.09■□□□□ 0.49
VRK3-206ENST00000594090 MXD3Q9BW11 206 aa18.09■□□□□ 0.49
VRK3-206ENST00000594090 CEP126Q9P2H0 1117 aa18.09■□□□□ 0.49
VRK3-206ENST00000594090 MYO3BQ8WXR4 1341 aa18.09■□□□□ 0.49
VRK3-206ENST00000594090 ARAP2Q8WZ64 1704 aa18.09■□□□□ 0.49
VRK3-206ENST00000594090 IFIT1P09914 478 aaKnown RBP18.08■□□□□ 0.49
VRK3-206ENST00000594090 ATP8B2P98198 1209 aa18.08■□□□□ 0.49
VRK3-206ENST00000594090 POLA2Q14181 598 aa18.08■□□□□ 0.49
VRK3-206ENST00000594090 SSH3Q8TE77 659 aa18.08■□□□□ 0.49
VRK3-206ENST00000594090 LPIN2Q92539 896 aa18.08■□□□□ 0.49
VRK3-206ENST00000594090 SLC5A1P13866 664 aa18.07■□□□□ 0.48
VRK3-206ENST00000594090 CAVIN4Q5BKX8 364 aa18.07■□□□□ 0.48
VRK3-206ENST00000594090 CEP85Q6P2H3 762 aa18.07■□□□□ 0.48
VRK3-206ENST00000594090 SAMD7Q7Z3H4 446 aa18.07■□□□□ 0.48
VRK3-206ENST00000594090 FBXO33Q7Z6M2 555 aa18.07■□□□□ 0.48
VRK3-206ENST00000594090 TDRD7Q8NHU6 1098 aaKnown RBP18.07■□□□□ 0.48
VRK3-206ENST00000594090 EGFRP00533 1210 aa18.06■□□□□ 0.48
VRK3-206ENST00000594090 HIRAP54198 1017 aaPredicted RBP18.06■□□□□ 0.48
VRK3-206ENST00000594090 ZNF280AP59817 542 aaPredicted RBP18.06■□□□□ 0.48
VRK3-206ENST00000594090 ATP2B3Q16720 1220 aa18.06■□□□□ 0.48
VRK3-206ENST00000594090 TBC1D10BQ4KMP7 808 aaPredicted RBP18.06■□□□□ 0.48
VRK3-206ENST00000594090 MAP1SQ66K74 1059 aaPredicted RBP18.06■□□□□ 0.48
VRK3-206ENST00000594090 VPS37DQ86XT2 251 aa18.06■□□□□ 0.48
VRK3-206ENST00000594090 ZBTB40Q9NUA8 1239 aa18.06■□□□□ 0.48
VRK3-206ENST00000594090 USP17L8P0C7I0 530 aa18.06■□□□□ 0.48
VRK3-206ENST00000594090 KIF4BQ2VIQ3 1234 aa18.06■□□□□ 0.48
VRK3-206ENST00000594090 CHMP4BQ9H444 224 aaKnown RBP18.06■□□□□ 0.48
VRK3-206ENST00000594090 SASH1O94885 1247 aa18.05■□□□□ 0.48
VRK3-206ENST00000594090 BCAMP50895 628 aa18.05■□□□□ 0.48
VRK3-206ENST00000594090 RRP1P56182 461 aaKnown RBP18.05■□□□□ 0.48
VRK3-206ENST00000594090 CNTROBQ8N137 903 aa18.05■□□□□ 0.48
VRK3-206ENST00000594090 ZC3H15Q8WU90 426 aaKnown RBP18.05■□□□□ 0.48
VRK3-206ENST00000594090 JAG2Q9Y219 1238 aa18.05■□□□□ 0.48
VRK3-206ENST00000594090 FAM205AQ6ZU69 1335 aa18.05■□□□□ 0.48
VRK3-206ENST00000594090 MYH13Q9UKX3 1938 aa18.05■□□□□ 0.48
VRK3-206ENST00000594090 ITGBL1O95965 494 aaPredicted RBP18.04■□□□□ 0.48
VRK3-206ENST00000594090 APLP1P51693 650 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms