RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 DNAJC14Q6Y2X3 702 aaPredicted RBP8.52□□□□□ -1.05
SMAD4-216ENST00000593223 WFDC8Q8IUA0 241 aa8.52□□□□□ -1.05
SMAD4-216ENST00000593223 ZKSCAN3Q9BRR0 538 aa8.52□□□□□ -1.05
SMAD4-216ENST00000593223 NLRP2Q9NX02 1062 aa8.52□□□□□ -1.05
SMAD4-216ENST00000593223 SPDYE3A6NKU9 549 aa8.51□□□□□ -1.05
SMAD4-216ENST00000593223 RNF225M0QZC1 329 aaPredicted RBP8.51□□□□□ -1.05
SMAD4-216ENST00000593223 P4HBP07237 508 aaKnown RBP8.51□□□□□ -1.05
SMAD4-216ENST00000593223 IL22RA1Q8N6P7 574 aa8.51□□□□□ -1.05
SMAD4-216ENST00000593223 PLVAPQ9BX97 442 aa8.51□□□□□ -1.05
SMAD4-216ENST00000593223 EHD4Q9H223 541 aa8.51□□□□□ -1.05
SMAD4-216ENST00000593223 NOP53Q9NZM5 478 aaKnown RBP8.51□□□□□ -1.05
SMAD4-216ENST00000593223 A0A1W2PP55 124 aa8.5□□□□□ -1.05
SMAD4-216ENST00000593223 NID1P14543 1247 aa8.5□□□□□ -1.05
SMAD4-216ENST00000593223 PTPRAP18433 802 aa8.5□□□□□ -1.05
SMAD4-216ENST00000593223 ERCC3P19447 782 aa8.5□□□□□ -1.05
SMAD4-216ENST00000593223 GRIK5Q16478 980 aa8.5□□□□□ -1.05
SMAD4-216ENST00000593223 EAPPQ56P03 285 aaPredicted RBP8.5□□□□□ -1.05
SMAD4-216ENST00000593223 PEAR1Q5VY43 1037 aaPredicted RBP8.5□□□□□ -1.05
SMAD4-216ENST00000593223 MSL1Q68DK7 614 aa8.5□□□□□ -1.05
SMAD4-216ENST00000593223 DMRTC2Q8IXT2 367 aaPredicted RBP8.5□□□□□ -1.05
SMAD4-216ENST00000593223 ASAP3Q8TDY4 903 aa8.5□□□□□ -1.05
SMAD4-216ENST00000593223 TRIM11Q96F44 468 aa8.5□□□□□ -1.05
SMAD4-216ENST00000593223 POP1Q99575 1024 aaKnown RBP8.5□□□□□ -1.05
SMAD4-216ENST00000593223 LDHBP07195 334 aaKnown RBP8.49□□□□□ -1.05
SMAD4-216ENST00000593223 CDC27P30260 824 aa8.49□□□□□ -1.05
SMAD4-216ENST00000593223 IRS1P35568 1242 aa8.49□□□□□ -1.05
SMAD4-216ENST00000593223 ALG1LQ6GMV1 187 aa8.49□□□□□ -1.05
SMAD4-216ENST00000593223 CACTIN-AS1Q8N1I8 211 aa8.49□□□□□ -1.05
SMAD4-216ENST00000593223 TMEM102Q8N9M5 508 aaPredicted RBP8.49□□□□□ -1.05
SMAD4-216ENST00000593223 EPS8L3Q8TE67 593 aaKnown RBP8.49□□□□□ -1.05
SMAD4-216ENST00000593223 HHIPQ96QV1 700 aa8.49□□□□□ -1.05
SMAD4-216ENST00000593223 LIN7BQ9HAP6 207 aa8.49□□□□□ -1.05
SMAD4-216ENST00000593223 NFKBIEO00221 500 aa8.48□□□□□ -1.05
SMAD4-216ENST00000593223 CDC25BP30305 580 aa8.48□□□□□ -1.05
SMAD4-216ENST00000593223 COL9A3Q14050 684 aaPredicted RBP8.48□□□□□ -1.05
SMAD4-216ENST00000593223 NPAS4Q8IUM7 802 aa8.48□□□□□ -1.05
SMAD4-216ENST00000593223 SUV39H2Q9H5I1 410 aa8.48□□□□□ -1.05
SMAD4-216ENST00000593223 WWC3Q9ULE0 1092 aa8.48□□□□□ -1.05
SMAD4-216ENST00000593223 CABP4P57796 275 aa8.47□□□□□ -1.05
SMAD4-216ENST00000593223 FGD1P98174 961 aa8.47□□□□□ -1.05
SMAD4-216ENST00000593223 TRIM28Q13263 835 aaKnown RBP8.47□□□□□ -1.05
SMAD4-216ENST00000593223 COL19A1Q14993 1142 aa8.47□□□□□ -1.05
SMAD4-216ENST00000593223 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.47□□□□□ -1.05
SMAD4-216ENST00000593223 PRRT3Q5FWE3 981 aa8.47□□□□□ -1.05
SMAD4-216ENST00000593223 KIAA0319Q5VV43 1072 aa8.47□□□□□ -1.05
SMAD4-216ENST00000593223 NXPE3Q969Y0 559 aa8.47□□□□□ -1.05
SMAD4-216ENST00000593223 SETDB2Q96T68 719 aa8.47□□□□□ -1.05
SMAD4-216ENST00000593223 MUC3BQ9H195 1237 aa8.47□□□□□ -1.05
SMAD4-216ENST00000593223 SH2B1Q9NRF2 756 aaPredicted RBP8.47□□□□□ -1.05
SMAD4-216ENST00000593223 PPP4R2Q9NY27 417 aa8.47□□□□□ -1.05
SMAD4-216ENST00000593223 PPME1Q9Y570 386 aa8.47□□□□□ -1.05
SMAD4-216ENST00000593223 RAC1P63000 192 aa8.46□□□□□ -1.06
SMAD4-216ENST00000593223 KCNMA1Q12791 1236 aa8.46□□□□□ -1.06
SMAD4-216ENST00000593223 FAM117BQ6P1L5 589 aa8.46□□□□□ -1.06
SMAD4-216ENST00000593223 PI16Q6UXB8 463 aa8.46□□□□□ -1.06
SMAD4-216ENST00000593223 FBF1Q8TES7 1133 aa8.46□□□□□ -1.06
SMAD4-216ENST00000593223 TRAK1Q9UPV9 953 aa8.46□□□□□ -1.06
SMAD4-216ENST00000593223 BSNDQ8WZ55 320 aa8.45□□□□□ -1.06
SMAD4-216ENST00000593223 BHLHE41Q9C0J9 482 aaPredicted RBP8.45□□□□□ -1.06
SMAD4-216ENST00000593223 A0A0A0MRY4 1105 aa8.44□□□□□ -1.06
SMAD4-216ENST00000593223 METTL12A8MUP2 240 aa8.44□□□□□ -1.06
SMAD4-216ENST00000593223 FAM229AH3BQW9 127 aa8.44□□□□□ -1.06
SMAD4-216ENST00000593223 LINC01387J3KSC0 135 aa8.44□□□□□ -1.06
SMAD4-216ENST00000593223 BAG6P46379 1132 aa8.44□□□□□ -1.06
SMAD4-216ENST00000593223 GRM2Q14416 872 aa8.44□□□□□ -1.06
SMAD4-216ENST00000593223 TXNDC11Q6PKC3 985 aa8.44□□□□□ -1.06
SMAD4-216ENST00000593223 ADAMTSL4Q6UY14 1074 aa8.44□□□□□ -1.06
SMAD4-216ENST00000593223 CCNJLQ8IV13 435 aa8.44□□□□□ -1.06
SMAD4-216ENST00000593223 ADAM19Q9H013 955 aa8.44□□□□□ -1.06
SMAD4-216ENST00000593223 A0A096LPE4 126 aa8.43□□□□□ -1.06
SMAD4-216ENST00000593223 A0A1W2PPZ6 126 aa8.43□□□□□ -1.06
SMAD4-216ENST00000593223 PRPF40AO75400 957 aaKnown RBP8.43□□□□□ -1.06
SMAD4-216ENST00000593223 EPHA1P21709 976 aa8.43□□□□□ -1.06
SMAD4-216ENST00000593223 TCF12Q99081 682 aa8.43□□□□□ -1.06
SMAD4-216ENST00000593223 BCL2L13Q9BXK5 485 aa8.43□□□□□ -1.06
SMAD4-216ENST00000593223 BCO2Q9BYV7 579 aa8.43□□□□□ -1.06
SMAD4-216ENST00000593223 SPG7Q9UQ90 795 aa8.43□□□□□ -1.06
SMAD4-216ENST00000593223 CCDC9Q9Y3X0 531 aaKnown RBP8.43□□□□□ -1.06
SMAD4-216ENST00000593223 COL8A1P27658 744 aa8.42□□□□□ -1.06
SMAD4-216ENST00000593223 GRIA4P48058 902 aa8.42□□□□□ -1.06
SMAD4-216ENST00000593223 SPRED3Q2MJR0 410 aa8.42□□□□□ -1.06
SMAD4-216ENST00000593223 DTWD1Q8N5C7 304 aa8.42□□□□□ -1.06
SMAD4-216ENST00000593223 DUSP9Q99956 384 aaKnown RBP8.42□□□□□ -1.06
SMAD4-216ENST00000593223 H3BRJ5 948 aa8.41□□□□□ -1.06
SMAD4-216ENST00000593223 SPATA31C1P0DKV0 1188 aa8.41□□□□□ -1.06
SMAD4-216ENST00000593223 FCGRTP55899 365 aa8.41□□□□□ -1.06
SMAD4-216ENST00000593223 NXPE4Q6UWF7 544 aa8.41□□□□□ -1.06
SMAD4-216ENST00000593223 FMR1NBQ8N0W7 255 aaPredicted RBP8.41□□□□□ -1.06
SMAD4-216ENST00000593223 SLC7A3Q8WY07 619 aa8.41□□□□□ -1.06
SMAD4-216ENST00000593223 PODXL2Q9NZ53 605 aa8.41□□□□□ -1.06
SMAD4-216ENST00000593223 SOX13Q9UN79 622 aa8.41□□□□□ -1.06
SMAD4-216ENST00000593223 TMEM238LA0A1B0GVL6 79 aa8.4□□□□□ -1.06
SMAD4-216ENST00000593223 APBA3O96018 575 aa8.4□□□□□ -1.06
SMAD4-216ENST00000593223 ARL4DP49703 201 aa8.4□□□□□ -1.06
SMAD4-216ENST00000593223 XPCQ01831 940 aaPredicted RBP8.4□□□□□ -1.06
SMAD4-216ENST00000593223 RASSF7Q02833 373 aa8.4□□□□□ -1.06
SMAD4-216ENST00000593223 IKBKEQ14164 716 aa8.4□□□□□ -1.06
SMAD4-216ENST00000593223 PRPF40BQ6NWY9 871 aaKnown RBP8.4□□□□□ -1.06
SMAD4-216ENST00000593223 DTHD1Q6ZMT9 781 aa8.4□□□□□ -1.06
SMAD4-216ENST00000593223 FBXO33Q7Z6M2 555 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms