RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 HIRAP54198 1017 aaPredicted RBP13.79□□□□□ -0.2
LIG3-214ENST00000592244 BRPF1P55201 1214 aaPredicted RBP13.79□□□□□ -0.2
LIG3-214ENST00000592244 ZNF280AP59817 542 aaPredicted RBP13.79□□□□□ -0.2
LIG3-214ENST00000592244 TTLL5Q6EMB2 1281 aa13.79□□□□□ -0.2
LIG3-214ENST00000592244 C15orf52Q6ZUT6 534 aaKnown RBP13.79□□□□□ -0.2
LIG3-214ENST00000592244 KRT26Q7Z3Y9 468 aa13.79□□□□□ -0.2
LIG3-214ENST00000592244 SULF1Q8IWU6 871 aa13.79□□□□□ -0.2
LIG3-214ENST00000592244 AIDAQ96BJ3 306 aa13.79□□□□□ -0.2
LIG3-214ENST00000592244 SUCLG2Q96I99 432 aa13.79□□□□□ -0.2
LIG3-214ENST00000592244 HDAC9Q9UKV0 1011 aa13.79□□□□□ -0.2
LIG3-214ENST00000592244 COL4A1P02462 1669 aa13.79□□□□□ -0.2
LIG3-214ENST00000592244 MYH3P11055 1940 aa13.78□□□□□ -0.2
LIG3-214ENST00000592244 TRAF5O00463 557 aa13.78□□□□□ -0.2
LIG3-214ENST00000592244 EPHA10Q5JZY3 1008 aa13.78□□□□□ -0.2
LIG3-214ENST00000592244 PAXIP1Q6ZW49 1069 aaPredicted RBP13.78□□□□□ -0.2
LIG3-214ENST00000592244 MIER1Q8N108 512 aa13.78□□□□□ -0.2
LIG3-214ENST00000592244 GLIS2Q9BZE0 524 aaPredicted RBP13.78□□□□□ -0.2
LIG3-214ENST00000592244 BICC1Q9H694 974 aaKnown RBP13.78□□□□□ -0.2
LIG3-214ENST00000592244 NOB1Q9ULX3 412 aaKnown RBP13.78□□□□□ -0.2
LIG3-214ENST00000592244 MROH5Q6ZUA9 1318 aa13.78□□□□□ -0.2
LIG3-214ENST00000592244 PLIN1O60240 522 aa13.77□□□□□ -0.21
LIG3-214ENST00000592244 TAF5LO75529 589 aa13.77□□□□□ -0.21
LIG3-214ENST00000592244 UBTFL1P0CB47 393 aaPredicted RBP13.77□□□□□ -0.21
LIG3-214ENST00000592244 HNRNPUQ00839 825 aaKnown RBP eCLIP13.77□□□□□ -0.21
LIG3-214ENST00000592244 UBE4AQ14139 1066 aa13.77□□□□□ -0.21
LIG3-214ENST00000592244 RABL6Q3YEC7 729 aaPredicted RBP13.77□□□□□ -0.21
LIG3-214ENST00000592244 DACT2Q5SW24 774 aa13.77□□□□□ -0.21
LIG3-214ENST00000592244 USP48Q86UV5 1035 aa13.77□□□□□ -0.21
LIG3-214ENST00000592244 HELBQ8NG08 1087 aaPredicted RBP13.77□□□□□ -0.21
LIG3-214ENST00000592244 ARHGAP45Q92619 1136 aa13.77□□□□□ -0.21
LIG3-214ENST00000592244 ZNF408Q9H9D4 720 aa13.77□□□□□ -0.21
LIG3-214ENST00000592244 MYOZ2Q9NPC6 264 aa13.77□□□□□ -0.21
LIG3-214ENST00000592244 SHTN1A0MZ66 631 aa13.76□□□□□ -0.21
LIG3-214ENST00000592244 HSPA1AP0DMV8 641 aaKnown RBP13.76□□□□□ -0.21
LIG3-214ENST00000592244 HSPA1BP0DMV9 641 aaKnown RBP13.76□□□□□ -0.21
LIG3-214ENST00000592244 VEGFBP49765 207 aa13.76□□□□□ -0.21
LIG3-214ENST00000592244 RARSP54136 660 aaKnown RBP13.76□□□□□ -0.21
LIG3-214ENST00000592244 MAP2K1Q02750 393 aaPredicted RBP13.76□□□□□ -0.21
LIG3-214ENST00000592244 ZNF594Q96JF6 807 aaPredicted RBP13.76□□□□□ -0.21
LIG3-214ENST00000592244 HHIPL1Q96JK4 782 aa13.76□□□□□ -0.21
LIG3-214ENST00000592244 GMLQ99445 158 aa13.76□□□□□ -0.21
LIG3-214ENST00000592244 USP44Q9H0E7 712 aa13.76□□□□□ -0.21
LIG3-214ENST00000592244 CD209Q9NNX6 404 aa13.76□□□□□ -0.21
LIG3-214ENST00000592244 GGA3Q9NZ52 723 aa13.76□□□□□ -0.21
LIG3-214ENST00000592244 TLL2Q9Y6L7 1015 aa13.76□□□□□ -0.21
LIG3-214ENST00000592244 PITPNM2Q9BZ72 1349 aa13.75□□□□□ -0.21
LIG3-214ENST00000592244 GTF2IP78347 998 aa13.75□□□□□ -0.21
LIG3-214ENST00000592244 SCARF1Q14162 830 aa13.75□□□□□ -0.21
LIG3-214ENST00000592244 METTL24Q5JXM2 366 aa13.75□□□□□ -0.21
LIG3-214ENST00000592244 CST9Q5W186 159 aa13.75□□□□□ -0.21
LIG3-214ENST00000592244 TXNRD3Q86VQ6 643 aa13.75□□□□□ -0.21
LIG3-214ENST00000592244 VPS37DQ86XT2 251 aa13.75□□□□□ -0.21
LIG3-214ENST00000592244 C2orf69Q8N8R5 385 aa13.75□□□□□ -0.21
LIG3-214ENST00000592244 BEGAINQ9BUH8 593 aa13.75□□□□□ -0.21
LIG3-214ENST00000592244 WDR33Q9C0J8 1336 aaKnown RBP13.74□□□□□ -0.21
LIG3-214ENST00000592244 WTIPA6NIX2 430 aaPredicted RBP13.74□□□□□ -0.21
LIG3-214ENST00000592244 CAVIN4Q5BKX8 364 aa13.74□□□□□ -0.21
LIG3-214ENST00000592244 KAZALD1Q96I82 304 aa13.74□□□□□ -0.21
LIG3-214ENST00000592244 CAPNS2Q96L46 248 aa13.74□□□□□ -0.21
LIG3-214ENST00000592244 EGFRP00533 1210 aa13.73□□□□□ -0.21
LIG3-214ENST00000592244 GNAI3P08754 354 aa13.73□□□□□ -0.21
LIG3-214ENST00000592244 IL1R1P14778 569 aa13.73□□□□□ -0.21
LIG3-214ENST00000592244 KLRK1P26718 216 aa13.73□□□□□ -0.21
LIG3-214ENST00000592244 HIBADHP31937 336 aaKnown RBP13.73□□□□□ -0.21
LIG3-214ENST00000592244 FKBP1AP62942 108 aaKnown RBP13.73□□□□□ -0.21
LIG3-214ENST00000592244 ANGEL2Q5VTE6 544 aaKnown RBP13.73□□□□□ -0.21
LIG3-214ENST00000592244 SAPCD2Q86UD0 394 aa13.73□□□□□ -0.21
LIG3-214ENST00000592244 ANKRD44Q8N8A2 993 aa13.73□□□□□ -0.21
LIG3-214ENST00000592244 RIPOR2Q9Y4F9 1068 aa13.73□□□□□ -0.21
LIG3-214ENST00000592244 MYO1BO43795 1136 aa13.72□□□□□ -0.21
LIG3-214ENST00000592244 FRAT2O75474 233 aaPredicted RBP13.72□□□□□ -0.21
LIG3-214ENST00000592244 SASH1O94885 1247 aa13.72□□□□□ -0.21
LIG3-214ENST00000592244 NF2P35240 595 aa13.72□□□□□ -0.21
LIG3-214ENST00000592244 MAP2K2P36507 400 aa13.72□□□□□ -0.21
LIG3-214ENST00000592244 FMR1Q06787 632 aaKnown RBP eCLIP13.72□□□□□ -0.21
LIG3-214ENST00000592244 GRM1Q13255 1194 aa13.72□□□□□ -0.21
LIG3-214ENST00000592244 KIAA0825Q8IV33 1275 aa13.72□□□□□ -0.21
LIG3-214ENST00000592244 GBA2Q9HCG7 927 aaPredicted RBP13.72□□□□□ -0.21
LIG3-214ENST00000592244 FBXO3Q9UK99 471 aa13.72□□□□□ -0.21
LIG3-214ENST00000592244 SNAP23O00161 211 aa13.71□□□□□ -0.21
LIG3-214ENST00000592244 PDE8BO95263 885 aa13.71□□□□□ -0.21
LIG3-214ENST00000592244 IFIT1P09914 478 aaKnown RBP13.71□□□□□ -0.21
LIG3-214ENST00000592244 CTCFP49711 727 aaPredicted RBP13.71□□□□□ -0.21
LIG3-214ENST00000592244 HUNKP57058 714 aa13.71□□□□□ -0.21
LIG3-214ENST00000592244 FKBP1BP68106 108 aa13.71□□□□□ -0.21
LIG3-214ENST00000592244 DLGAP5Q15398 846 aa13.71□□□□□ -0.21
LIG3-214ENST00000592244 APOBEC3FQ8IUX4 373 aaKnown RBP13.71□□□□□ -0.21
LIG3-214ENST00000592244 FRAT1Q92837 279 aaPredicted RBP13.71□□□□□ -0.21
LIG3-214ENST00000592244 PUS3Q9BZE2 481 aaKnown RBP13.71□□□□□ -0.21
LIG3-214ENST00000592244 ADM5C9JUS6 153 aa13.7□□□□□ -0.22
LIG3-214ENST00000592244 WNT10BO00744 389 aa13.7□□□□□ -0.22
LIG3-214ENST00000592244 PUM3Q15397 648 aaKnown RBP13.7□□□□□ -0.22
LIG3-214ENST00000592244 INTS3Q68E01 1043 aaKnown RBP13.7□□□□□ -0.22
LIG3-214ENST00000592244 CYP4F22Q6NT55 531 aa13.7□□□□□ -0.22
LIG3-214ENST00000592244 ATF7IPQ6VMQ6 1270 aa13.7□□□□□ -0.22
LIG3-214ENST00000592244 CCDC102AQ96A19 550 aa13.7□□□□□ -0.22
LIG3-214ENST00000592244 CDCA5Q96FF9 252 aa13.7□□□□□ -0.22
LIG3-214ENST00000592244 MXD3Q9BW11 206 aa13.7□□□□□ -0.22
LIG3-214ENST00000592244 IRS2Q9Y4H2 1338 aa13.69□□□□□ -0.22
LIG3-214ENST00000592244 EYA2O00167 538 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms