RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	GORAB	Q5T7V8	394 aa		18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	AKT1S1	Q96B36	256 aa		18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	ZNF512B	Q96KM6	892 aa	Predicted RBP	18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	MAP7D2	Q96T17	732 aa		18.51	■□□□□ 0.55
DDX39A-209	ENST00000589318	MYH7	P12883	1935 aa		18.5	■□□□□ 0.55
DDX39A-209	ENST00000589318	ZNF589	Q86UQ0	364 aa	Predicted RBP	18.5	■□□□□ 0.55
DDX39A-209	ENST00000589318	TICAM2	Q86XR7	235 aa		18.5	■□□□□ 0.55
DDX39A-209	ENST00000589318	NLRP3	Q96P20	1036 aa		18.5	■□□□□ 0.55
DDX39A-209	ENST00000589318	CCDC171	Q6TFL3	1326 aa		18.5	■□□□□ 0.55
DDX39A-209	ENST00000589318	MYO5A	Q9Y4I1	1855 aa	Known RBP	18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	MCAM	P43121	646 aa		18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	CHRND	Q07001	517 aa		18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	KIAA1211	Q6ZU35	1233 aa		18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	ANKRD18A	Q8IVF6	992 aa		18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	CELF1	Q92879	486 aa	Known RBP	18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	SLK	Q9H2G2	1235 aa	Predicted RBP	18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	CHMP5	Q9NZZ3	219 aa		18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	TM4SF1	P30408	202 aa		18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	PI16	Q6UXB8	463 aa		18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	BSDC1	Q9NW68	430 aa	Predicted RBP	18.49	■□□□□ 0.55
DDX39A-209	ENST00000589318	HMGB2	P26583	209 aa	Known RBP	18.48	■□□□□ 0.55
DDX39A-209	ENST00000589318	ARID4A	P29374	1257 aa	Predicted RBP	18.48	■□□□□ 0.55
DDX39A-209	ENST00000589318	PHKA1	P46020	1223 aa		18.48	■□□□□ 0.55
DDX39A-209	ENST00000589318	CCDC102B	Q68D86	513 aa		18.48	■□□□□ 0.55
DDX39A-209	ENST00000589318	TRIM44	Q96DX7	344 aa	Predicted RBP	18.48	■□□□□ 0.55
DDX39A-209	ENST00000589318	ZAP70	P43403	619 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	FKBP4	Q02790	459 aa	Known RBP eCLIP	18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	PRR5L	Q6MZQ0	368 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	MAP4K1	Q92918	833 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	SEC62	Q99442	399 aa	Known RBP	18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	GRPEL1	Q9HAV7	217 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	PODXL2	Q9NZ53	605 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318		K7ELQ4	463 aa	Predicted RBP	18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	SLC5A1	P13866	664 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	SLFNL1	Q499Z3	407 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	RASEF	Q8IZ41	740 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	CNBD1	Q8NA66	436 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	KCNB2	Q92953	911 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	SNX14	Q9Y5W7	946 aa		18.47	■□□□□ 0.55
DDX39A-209	ENST00000589318	TRAK2	O60296	914 aa		18.46	■□□□□ 0.55
DDX39A-209	ENST00000589318	NECTIN1	Q15223	517 aa		18.46	■□□□□ 0.55
DDX39A-209	ENST00000589318	DDR1	Q08345	913 aa		18.45	■□□□□ 0.54
DDX39A-209	ENST00000589318	ZMYM1	Q5SVZ6	1142 aa		18.45	■□□□□ 0.54
DDX39A-209	ENST00000589318	MINPP1	Q9UNW1	487 aa		18.45	■□□□□ 0.54
DDX39A-209	ENST00000589318	DOCK2	Q92608	1830 aa		18.45	■□□□□ 0.54
DDX39A-209	ENST00000589318	RPS8	P62241	208 aa	Known RBP	18.45	■□□□□ 0.54
DDX39A-209	ENST00000589318	MCMDC2	Q4G0Z9	681 aa		18.45	■□□□□ 0.54
DDX39A-209	ENST00000589318	TFCP2L1	Q9NZI6	479 aa		18.45	■□□□□ 0.54
DDX39A-209	ENST00000589318	RBM8A	Q9Y5S9	174 aa	Known RBP	18.45	■□□□□ 0.54
DDX39A-209	ENST00000589318	SERPINB2	P05120	415 aa		18.44	■□□□□ 0.54
DDX39A-209	ENST00000589318	CYP2E1	P05181	493 aa	Predicted RBP	18.44	■□□□□ 0.54
DDX39A-209	ENST00000589318	CCDC129	Q6ZRS4	1044 aa		18.44	■□□□□ 0.54
DDX39A-209	ENST00000589318	SPRYD3	Q8NCJ5	442 aa		18.44	■□□□□ 0.54
DDX39A-209	ENST00000589318	NRXN2	Q9P2S2	1712 aa		18.44	■□□□□ 0.54
DDX39A-209	ENST00000589318	WTIP	A6NIX2	430 aa	Predicted RBP	18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	POLRMT	O00411	1230 aa	Known RBP	18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	RNF113A	O15541	343 aa	Known RBP	18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	UQCRFS1P1	P0C7P4	283 aa		18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	COL23A1	Q86Y22	540 aa	Predicted RBP	18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	HELLS	Q9NRZ9	838 aa		18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	NPHP1	O15259	732 aa		18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	ST18	O60284	1047 aa		18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	NEK4	P51957	841 aa		18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	PANK2	Q9BZ23	570 aa		18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	HMG20B	Q9P0W2	317 aa		18.43	■□□□□ 0.54
DDX39A-209	ENST00000589318	DDIT3	P35638	169 aa		18.42	■□□□□ 0.54
DDX39A-209	ENST00000589318	PRPF40B	Q6NWY9	871 aa	Known RBP	18.42	■□□□□ 0.54
DDX39A-209	ENST00000589318	ANKRD31	Q8N7Z5	1873 aa		18.42	■□□□□ 0.54
DDX39A-209	ENST00000589318	BCAM	P50895	628 aa		18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	RASGRF1	Q13972	1273 aa		18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	UBE4A	Q14139	1066 aa		18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	SKOR2	Q2VWA4	1001 aa	Predicted RBP	18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	CRY2	Q49AN0	593 aa		18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	CREB3L3	Q68CJ9	461 aa		18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	UPF3B	Q9BZI7	483 aa	Known RBP	18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	MAST3	O60307	1309 aa		18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	ZNF804B	A4D1E1	1349 aa		18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	OSBP2	Q969R2	916 aa		18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	PIH1D3	Q9NQM4	214 aa	Known RBP	18.41	■□□□□ 0.54
DDX39A-209	ENST00000589318	PNPLA7	Q6ZV29	1317 aa		18.4	■□□□□ 0.54
DDX39A-209	ENST00000589318	ZFY	P08048	801 aa	Predicted RBP	18.4	■□□□□ 0.54
DDX39A-209	ENST00000589318	MTERF4	Q7Z6M4	381 aa	Known RBP	18.4	■□□□□ 0.54
DDX39A-209	ENST00000589318		M0R2C6	588 aa		18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	SLC27A2	O14975	620 aa		18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	ADCK5	Q3MIX3	580 aa		18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	SPATA5	Q8NB90	893 aa		18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	ST5	P78524	1137 aa		18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	GRAP	Q13588	217 aa		18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	TTF1	Q15361	905 aa	Predicted RBP	18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	SLC51A	Q86UW1	340 aa		18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	GRAPL	Q8TC17	118 aa	Predicted RBP	18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	TTC14	Q96N46	770 aa		18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	CAMKK2	Q96RR4	588 aa		18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	TAF6L	Q9Y6J9	622 aa		18.39	■□□□□ 0.53
DDX39A-209	ENST00000589318	RPAP1	Q9BWH6	1393 aa	Predicted RBP	18.38	■□□□□ 0.53
DDX39A-209	ENST00000589318	LRRFIP1	Q32MZ4	808 aa	Known RBP	18.38	■□□□□ 0.53
DDX39A-209	ENST00000589318	VPS53	Q5VIR6	699 aa		18.38	■□□□□ 0.53
DDX39A-209	ENST00000589318	FLAD1	Q8NFF5	587 aa		18.38	■□□□□ 0.53
DDX39A-209	ENST00000589318	KLRG2	A4D1S0	409 aa	Predicted RBP	18.37	■□□□□ 0.53
DDX39A-209	ENST00000589318	ADD2	P35612	726 aa		18.37	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 44 ms