RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 WNT10BO00744 389 aa16.53■□□□□ 0.24
SS18-219ENST00000581570 PCCAP05165 728 aaPredicted RBP16.53■□□□□ 0.24
SS18-219ENST00000581570 PRKG1Q13976 671 aa16.53■□□□□ 0.24
SS18-219ENST00000581570 HABP4Q5JVS0 413 aaKnown RBP16.53■□□□□ 0.24
SS18-219ENST00000581570 CCDC146Q8IYE0 955 aa16.53■□□□□ 0.24
SS18-219ENST00000581570 JARID2Q92833 1246 aaPredicted RBP16.53■□□□□ 0.24
SS18-219ENST00000581570 MXD3Q9BW11 206 aa16.53■□□□□ 0.24
SS18-219ENST00000581570 TRIM35Q9UPQ4 493 aa16.53■□□□□ 0.24
SS18-219ENST00000581570 DACT2Q5SW24 774 aa16.52■□□□□ 0.24
SS18-219ENST00000581570 CCDC191Q8NCU4 936 aa16.52■□□□□ 0.24
SS18-219ENST00000581570 FBXW7Q969H0 707 aa16.52■□□□□ 0.24
SS18-219ENST00000581570 WTIPA6NIX2 430 aaPredicted RBP16.51■□□□□ 0.23
SS18-219ENST00000581570 ALDH1A1P00352 501 aa16.51■□□□□ 0.23
SS18-219ENST00000581570 SPRYD7Q5W111 196 aa16.51■□□□□ 0.23
SS18-219ENST00000581570 PHAXQ9H814 394 aaKnown RBP16.51■□□□□ 0.23
SS18-219ENST00000581570 CWC25Q9NXE8 425 aaPredicted RBP16.51■□□□□ 0.23
SS18-219ENST00000581570 TRIM17Q9Y577 477 aa16.51■□□□□ 0.23
SS18-219ENST00000581570 MYO3BQ8WXR4 1341 aa16.5■□□□□ 0.23
SS18-219ENST00000581570 SASH1O94885 1247 aa16.5■□□□□ 0.23
SS18-219ENST00000581570 LDLRAD1Q5T700 205 aa16.5■□□□□ 0.23
SS18-219ENST00000581570 STRIP1Q5VSL9 837 aa16.5■□□□□ 0.23
SS18-219ENST00000581570 INTS3Q68E01 1043 aaKnown RBP16.5■□□□□ 0.23
SS18-219ENST00000581570 CDC5LQ99459 802 aaKnown RBP16.5■□□□□ 0.23
SS18-219ENST00000581570 POTEFA5A3E0 1075 aa16.49■□□□□ 0.23
SS18-219ENST00000581570 MMP14P50281 582 aa16.49■□□□□ 0.23
SS18-219ENST00000581570 INHBEP58166 350 aa16.49■□□□□ 0.23
SS18-219ENST00000581570 APOBEC3FQ8IUX4 373 aaKnown RBP16.49■□□□□ 0.23
SS18-219ENST00000581570 ANGEL1Q9UNK9 670 aaKnown RBP16.49■□□□□ 0.23
SS18-219ENST00000581570 MINPP1Q9UNW1 487 aa16.49■□□□□ 0.23
SS18-219ENST00000581570 MED23Q9ULK4 1368 aa16.49■□□□□ 0.23
SS18-219ENST00000581570 MANSC4A6NHS7 340 aaPredicted RBP16.48■□□□□ 0.23
SS18-219ENST00000581570 CCT4P50991 539 aaKnown RBP16.48■□□□□ 0.23
SS18-219ENST00000581570 OTOP1Q7RTM1 612 aa16.48■□□□□ 0.23
SS18-219ENST00000581570 IFNL1Q8IU54 200 aa16.48■□□□□ 0.23
SS18-219ENST00000581570 RUNDC1Q96C34 613 aa16.48■□□□□ 0.23
SS18-219ENST00000581570 SLC10A4Q96EP9 437 aa16.48■□□□□ 0.23
SS18-219ENST00000581570 COA1Q9GZY4 146 aa16.48■□□□□ 0.23
SS18-219ENST00000581570 BSDC1Q9NW68 430 aaPredicted RBP16.48■□□□□ 0.23
SS18-219ENST00000581570 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.48■□□□□ 0.23
SS18-219ENST00000581570 RALBP1Q15311 655 aa16.47■□□□□ 0.23
SS18-219ENST00000581570 METTL22Q9BUU2 404 aaPredicted RBP16.47■□□□□ 0.23
SS18-219ENST00000581570 MBIPQ9NS73 344 aa16.47■□□□□ 0.23
SS18-219ENST00000581570 CTSWP56202 376 aa16.46■□□□□ 0.23
SS18-219ENST00000581570 TTLL5Q6EMB2 1281 aa16.46■□□□□ 0.23
SS18-219ENST00000581570 FZD1Q9UP38 647 aa16.46■□□□□ 0.23
SS18-219ENST00000581570 PSME4Q14997 1843 aa16.45■□□□□ 0.22
SS18-219ENST00000581570 ELL2O00472 640 aaPredicted RBP16.45■□□□□ 0.22
SS18-219ENST00000581570 DDX58O95786 925 aaKnown RBP16.45■□□□□ 0.22
SS18-219ENST00000581570 TXNRD3Q86VQ6 643 aa16.45■□□□□ 0.22
SS18-219ENST00000581570 KIAA0825Q8IV33 1275 aa16.45■□□□□ 0.22
SS18-219ENST00000581570 TTLL11Q8NHH1 800 aa16.45■□□□□ 0.22
SS18-219ENST00000581570 ERO1AQ96HE7 468 aa16.45■□□□□ 0.22
SS18-219ENST00000581570 ZBED3Q96IU2 234 aaPredicted RBP16.45■□□□□ 0.22
SS18-219ENST00000581570 GREM2Q9H772 168 aa16.45■□□□□ 0.22
SS18-219ENST00000581570 PTPN22Q9Y2R2 807 aa16.45■□□□□ 0.22
SS18-219ENST00000581570 LEMD3Q9Y2U8 911 aa16.45■□□□□ 0.22
SS18-219ENST00000581570 ZBTB48P10074 688 aaPredicted RBP16.44■□□□□ 0.22
SS18-219ENST00000581570 MAP3K11Q16584 847 aa16.44■□□□□ 0.22
SS18-219ENST00000581570 WNK4Q96J92 1243 aa16.44■□□□□ 0.22
SS18-219ENST00000581570 DEFB129Q9H1M3 183 aa16.44■□□□□ 0.22
SS18-219ENST00000581570 IGF2BP3O00425 579 aaKnown RBP eCLIP16.43■□□□□ 0.22
SS18-219ENST00000581570 PPP1R12BO60237 982 aaPredicted RBP16.43■□□□□ 0.22
SS18-219ENST00000581570 EN2P19622 333 aaPredicted RBP16.43■□□□□ 0.22
SS18-219ENST00000581570 GTF2IP78347 998 aa16.43■□□□□ 0.22
SS18-219ENST00000581570 WDR43Q15061 677 aaKnown RBP eCLIP16.43■□□□□ 0.22
SS18-219ENST00000581570 CD99L2Q8TCZ2 262 aa16.43■□□□□ 0.22
SS18-219ENST00000581570 ZNF853P0CG23 659 aa16.42■□□□□ 0.22
SS18-219ENST00000581570 DLGAP5Q15398 846 aa16.42■□□□□ 0.22
SS18-219ENST00000581570 OTUD7BQ6GQQ9 843 aa16.42■□□□□ 0.22
SS18-219ENST00000581570 CLMNQ96JQ2 1002 aa16.42■□□□□ 0.22
SS18-219ENST00000581570 EFCC1Q9HA90 598 aa16.42■□□□□ 0.22
SS18-219ENST00000581570 MAP3K2Q9Y2U5 619 aa16.42■□□□□ 0.22
SS18-219ENST00000581570 ZNF804BA4D1E1 1349 aa16.42■□□□□ 0.22
SS18-219ENST00000581570 IGHMBP2P38935 993 aaKnown RBP16.41■□□□□ 0.22
SS18-219ENST00000581570 FXR1P51114 621 aaKnown RBP eCLIP16.41■□□□□ 0.22
SS18-219ENST00000581570 ARMC5Q96C12 935 aa16.41■□□□□ 0.22
SS18-219ENST00000581570 ADAMTS8Q9UP79 889 aa16.41■□□□□ 0.22
SS18-219ENST00000581570 UNCXA6NJT0 531 aa16.4■□□□□ 0.22
SS18-219ENST00000581570 IGKV5-2P06315 115 aa16.4■□□□□ 0.22
SS18-219ENST00000581570 KLRK1P26718 216 aa16.4■□□□□ 0.22
SS18-219ENST00000581570 CRHR2Q13324 411 aa16.4■□□□□ 0.22
SS18-219ENST00000581570 SUPT20HL1Q3ZLR7 823 aa16.4■□□□□ 0.22
SS18-219ENST00000581570 ANKRD2Q9GZV1 360 aa16.4■□□□□ 0.22
SS18-219ENST00000581570 IFT57Q9NWB7 429 aa16.4■□□□□ 0.22
SS18-219ENST00000581570 PPP2R3BQ9Y5P8 575 aa16.4■□□□□ 0.22
SS18-219ENST00000581570 COL1A1P02452 1464 aaPredicted RBP16.4■□□□□ 0.22
SS18-219ENST00000581570 GNAI1P63096 354 aa16.39■□□□□ 0.21
SS18-219ENST00000581570 SP3Q02447 781 aa16.39■□□□□ 0.21
SS18-219ENST00000581570 CCDC30Q5VVM6 783 aa16.39■□□□□ 0.21
SS18-219ENST00000581570 KSR2Q6VAB6 950 aa16.39■□□□□ 0.21
SS18-219ENST00000581570 C8orf58Q8NAV2 365 aa16.39■□□□□ 0.21
SS18-219ENST00000581570 MTMR14Q8NCE2 650 aa16.39■□□□□ 0.21
SS18-219ENST00000581570 TMEM106CQ9BVX2 250 aa16.39■□□□□ 0.21
SS18-219ENST00000581570 CHMP4AQ9BY43 222 aa16.39■□□□□ 0.21
SS18-219ENST00000581570 CD209Q9NNX6 404 aa16.39■□□□□ 0.21
SS18-219ENST00000581570 PI4KAP2A4QPH2 592 aa16.38■□□□□ 0.21
SS18-219ENST00000581570 KCNJ4P48050 445 aa16.38■□□□□ 0.21
SS18-219ENST00000581570 IREB2P48200 963 aaKnown RBP16.38■□□□□ 0.21
SS18-219ENST00000581570 NEXNQ0ZGT2 675 aa16.38■□□□□ 0.21
SS18-219ENST00000581570 PI4KAP1Q8N8J0 262 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms