RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 USP17L4A6NCW7 530 aa13.6□□□□□ -0.23
RFFL-209ENST00000581265 WTIPA6NIX2 430 aaPredicted RBP13.6□□□□□ -0.23
RFFL-209ENST00000581265 NEURL1BA8MQ27 555 aa13.6□□□□□ -0.23
RFFL-209ENST00000581265 SCARF1Q14162 830 aa13.6□□□□□ -0.23
RFFL-209ENST00000581265 PKN2Q16513 984 aaKnown RBP13.6□□□□□ -0.23
RFFL-209ENST00000581265 CWF19L2Q2TBE0 894 aaKnown RBP13.6□□□□□ -0.23
RFFL-209ENST00000581265 HABP4Q5JVS0 413 aaKnown RBP13.6□□□□□ -0.23
RFFL-209ENST00000581265 G2E3Q7L622 706 aa13.6□□□□□ -0.23
RFFL-209ENST00000581265 USP17L1Q7RTZ2 530 aa13.6□□□□□ -0.23
RFFL-209ENST00000581265 GREM2Q9H772 168 aa13.6□□□□□ -0.23
RFFL-209ENST00000581265 GGA3Q9NZ52 723 aa13.6□□□□□ -0.23
RFFL-209ENST00000581265 ASTN2O75129 1339 aaPredicted RBP13.6□□□□□ -0.23
RFFL-209ENST00000581265 PLA2G12BQ9BX93 195 aa13.59□□□□□ -0.23
RFFL-209ENST00000581265 CCT4P50991 539 aaKnown RBP13.58□□□□□ -0.24
RFFL-209ENST00000581265 GCKRQ14397 625 aa13.58□□□□□ -0.24
RFFL-209ENST00000581265 ANGEL2Q5VTE6 544 aaKnown RBP13.58□□□□□ -0.24
RFFL-209ENST00000581265 UBE3BQ7Z3V4 1068 aa13.58□□□□□ -0.24
RFFL-209ENST00000581265 CDCA5Q96FF9 252 aa13.58□□□□□ -0.24
RFFL-209ENST00000581265 MYOZ2Q9NPC6 264 aa13.58□□□□□ -0.24
RFFL-209ENST00000581265 LEMD3Q9Y2U8 911 aa13.58□□□□□ -0.24
RFFL-209ENST00000581265 PITPNM2Q9BZ72 1349 aa13.58□□□□□ -0.24
RFFL-209ENST00000581265 MED23Q9ULK4 1368 aa13.58□□□□□ -0.24
RFFL-209ENST00000581265 CSF1RP07333 972 aa13.57□□□□□ -0.24
RFFL-209ENST00000581265 FKBP1BP68106 108 aa13.57□□□□□ -0.24
RFFL-209ENST00000581265 DACT2Q5SW24 774 aa13.57□□□□□ -0.24
RFFL-209ENST00000581265 COA1Q9GZY4 146 aa13.57□□□□□ -0.24
RFFL-209ENST00000581265 SLC10A3P09131 477 aa13.56□□□□□ -0.24
RFFL-209ENST00000581265 IGHMBP2P38935 993 aaKnown RBP13.56□□□□□ -0.24
RFFL-209ENST00000581265 MMP14P50281 582 aa13.56□□□□□ -0.24
RFFL-209ENST00000581265 CASP7P55210 303 aa13.56□□□□□ -0.24
RFFL-209ENST00000581265 FLIIQ13045 1269 aa13.56□□□□□ -0.24
RFFL-209ENST00000581265 STRIP1Q5VSL9 837 aa13.56□□□□□ -0.24
RFFL-209ENST00000581265 REM2Q8IYK8 340 aaPredicted RBP13.56□□□□□ -0.24
RFFL-209ENST00000581265 OGFOD1Q8N543 542 aa13.56□□□□□ -0.24
RFFL-209ENST00000581265 LINS1Q8NG48 757 aa13.56□□□□□ -0.24
RFFL-209ENST00000581265 CSRNP1Q96S65 589 aa13.56□□□□□ -0.24
RFFL-209ENST00000581265 ANKRD2Q9GZV1 360 aa13.56□□□□□ -0.24
RFFL-209ENST00000581265 VAMP4O75379 141 aa13.55□□□□□ -0.24
RFFL-209ENST00000581265 ITGA6P23229 1130 aa13.55□□□□□ -0.24
RFFL-209ENST00000581265 TXNRD3Q86VQ6 643 aa13.55□□□□□ -0.24
RFFL-209ENST00000581265 WDR63Q8IWG1 891 aa13.55□□□□□ -0.24
RFFL-209ENST00000581265 DNAAF4Q8WXU2 420 aa13.55□□□□□ -0.24
RFFL-209ENST00000581265 MYH16Q9H6N6 1097 aa13.55□□□□□ -0.24
RFFL-209ENST00000581265 MYO3BQ8WXR4 1341 aa13.55□□□□□ -0.24
RFFL-209ENST00000581265 FKBP5Q13451 457 aaPredicted RBP13.54□□□□□ -0.24
RFFL-209ENST00000581265 NBPF9Q3BBW0 867 aa13.54□□□□□ -0.24
RFFL-209ENST00000581265 MPHOSPH8Q99549 860 aa13.54□□□□□ -0.24
RFFL-209ENST00000581265 PSME4Q14997 1843 aa13.54□□□□□ -0.24
RFFL-209ENST00000581265 ZNF804BA4D1E1 1349 aa13.54□□□□□ -0.24
RFFL-209ENST00000581265 WNT10BO00744 389 aa13.53□□□□□ -0.24
RFFL-209ENST00000581265 TTLL5Q6EMB2 1281 aa13.53□□□□□ -0.24
RFFL-209ENST00000581265 MXD3Q9BW11 206 aa13.53□□□□□ -0.24
RFFL-209ENST00000581265 MRS2Q9HD23 443 aa13.53□□□□□ -0.24
RFFL-209ENST00000581265 FANCIQ9NVI1 1328 aa13.53□□□□□ -0.24
RFFL-209ENST00000581265 MYH3P11055 1940 aa13.52□□□□□ -0.24
RFFL-209ENST00000581265 RASAL3Q86YV0 1011 aa13.52□□□□□ -0.25
RFFL-209ENST00000581265 ANKRD18BA2A2Z9 1011 aa13.51□□□□□ -0.25
RFFL-209ENST00000581265 TBC1D8O95759 1140 aa13.51□□□□□ -0.25
RFFL-209ENST00000581265 KLRK1P26718 216 aa13.51□□□□□ -0.25
RFFL-209ENST00000581265 EXOSC9Q06265 439 aaKnown RBP13.51□□□□□ -0.25
RFFL-209ENST00000581265 CHRNDQ07001 517 aa13.51□□□□□ -0.25
RFFL-209ENST00000581265 PRAMEF18Q5VWM3 479 aa13.51□□□□□ -0.25
RFFL-209ENST00000581265 FBXO46Q6PJ61 603 aaPredicted RBP13.51□□□□□ -0.25
RFFL-209ENST00000581265 C15orf52Q6ZUT6 534 aaKnown RBP13.51□□□□□ -0.25
RFFL-209ENST00000581265 ZNF296Q8WUU4 475 aaPredicted RBP13.51□□□□□ -0.25
RFFL-209ENST00000581265 SCAF8Q9UPN6 1271 aaKnown RBP13.51□□□□□ -0.25
RFFL-209ENST00000581265 UBE2Q2LH0YL09 131 aa13.5□□□□□ -0.25
RFFL-209ENST00000581265 GTF2IP78347 998 aa13.5□□□□□ -0.25
RFFL-209ENST00000581265 FOXO4P98177 505 aa13.5□□□□□ -0.25
RFFL-209ENST00000581265 BEND3Q5T5X7 828 aa13.5□□□□□ -0.25
RFFL-209ENST00000581265 MOB2Q70IA6 237 aa13.5□□□□□ -0.25
RFFL-209ENST00000581265 FBXW7Q969H0 707 aa13.5□□□□□ -0.25
RFFL-209ENST00000581265 ZBED3Q96IU2 234 aaPredicted RBP13.5□□□□□ -0.25
RFFL-209ENST00000581265 CD209Q9NNX6 404 aa13.5□□□□□ -0.25
RFFL-209ENST00000581265 CACNA1FO60840 1977 aa13.5□□□□□ -0.25
RFFL-209ENST00000581265 AKAP11Q9UKA4 1901 aa13.5□□□□□ -0.25
RFFL-209ENST00000581265 IRS2Q9Y4H2 1338 aa13.49□□□□□ -0.25
RFFL-209ENST00000581265 KCNJ4P48050 445 aa13.49□□□□□ -0.25
RFFL-209ENST00000581265 IFIT5Q13325 482 aaKnown RBP13.49□□□□□ -0.25
RFFL-209ENST00000581265 KIAA0825Q8IV33 1275 aa13.49□□□□□ -0.25
RFFL-209ENST00000581265 SALL2Q9Y467 1007 aaPredicted RBP13.49□□□□□ -0.25
RFFL-209ENST00000581265 PAPPA2Q9BXP8 1791 aa13.48□□□□□ -0.25
RFFL-209ENST00000581265 F6X3S4 739 aa13.48□□□□□ -0.25
RFFL-209ENST00000581265 ANP32CO43423 234 aa13.48□□□□□ -0.25
RFFL-209ENST00000581265 NF2P35240 595 aa13.48□□□□□ -0.25
RFFL-209ENST00000581265 TM4SF4P48230 202 aa13.48□□□□□ -0.25
RFFL-209ENST00000581265 SPINK5Q9NQ38 1064 aaPredicted RBP13.48□□□□□ -0.25
RFFL-209ENST00000581265 GPR25O00155 361 aa13.47□□□□□ -0.25
RFFL-209ENST00000581265 SNAP23O00161 211 aa13.47□□□□□ -0.25
RFFL-209ENST00000581265 TAF5LO75529 589 aa13.47□□□□□ -0.25
RFFL-209ENST00000581265 SASH1O94885 1247 aa13.47□□□□□ -0.25
RFFL-209ENST00000581265 IL1R1P14778 569 aa13.47□□□□□ -0.25
RFFL-209ENST00000581265 FXR1P51114 621 aaKnown RBP eCLIP13.47□□□□□ -0.25
RFFL-209ENST00000581265 TTLL12Q14166 644 aaPredicted RBP13.47□□□□□ -0.25
RFFL-209ENST00000581265 APOBEC3FQ8IUX4 373 aaKnown RBP13.47□□□□□ -0.25
RFFL-209ENST00000581265 MTMR14Q8NCE2 650 aa13.47□□□□□ -0.25
RFFL-209ENST00000581265 HELBQ8NG08 1087 aaPredicted RBP13.47□□□□□ -0.25
RFFL-209ENST00000581265 ZNF646O15015 1829 aaPredicted RBP13.46□□□□□ -0.25
RFFL-209ENST00000581265 SPEF2Q9C093 1822 aa13.46□□□□□ -0.25
RFFL-209ENST00000581265 GRM8O00222 908 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms