RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 PPM1EQ8WY54 764 aa15.99■□□□□ 0.15
ITGB4-207ENST00000580542 ATP6V1DQ9Y5K8 247 aa15.99■□□□□ 0.15
ITGB4-207ENST00000580542 KIF2AO00139 706 aaPredicted RBP15.98■□□□□ 0.15
ITGB4-207ENST00000580542 GIGYF1O75420 1035 aaPredicted RBP15.98■□□□□ 0.15
ITGB4-207ENST00000580542 IVLP07476 585 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 GORABQ5T7V8 394 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 UPF3BQ9BZI7 483 aaKnown RBP15.98■□□□□ 0.15
ITGB4-207ENST00000580542 NEMFO60524 1076 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.98■□□□□ 0.15
ITGB4-207ENST00000580542 FAM212AQ96EL1 285 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 THRAP3Q9Y2W1 955 aaKnown RBP15.98■□□□□ 0.15
ITGB4-207ENST00000580542 TNS2Q63HR2 1409 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 ITGB4P16144 1822 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 EIF3CLB5ME19 914 aaKnown RBP15.98■□□□□ 0.15
ITGB4-207ENST00000580542 MAP2K2P36507 400 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 MCTP2Q6DN12 878 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 ZNF790Q6PG37 636 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 REXO1L1PQ8IX06 675 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 CKAP2LQ8IYA6 745 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 ANKRD20A12PQ8NF67 263 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 EXOC4Q96A65 974 aa15.98■□□□□ 0.15
ITGB4-207ENST00000580542 EIF3CQ99613 913 aaKnown RBP15.98■□□□□ 0.15
ITGB4-207ENST00000580542 ELP1O95163 1332 aa15.97■□□□□ 0.15
ITGB4-207ENST00000580542 KCPQ6ZWJ8 1503 aa15.97■□□□□ 0.15
ITGB4-207ENST00000580542 ATP6V1AP38606 617 aa15.97■□□□□ 0.15
ITGB4-207ENST00000580542 CCAR2Q8N163 923 aaKnown RBP15.97■□□□□ 0.15
ITGB4-207ENST00000580542 NUP62CLQ9H1M0 184 aa15.97■□□□□ 0.15
ITGB4-207ENST00000580542 ADAM21Q9UKJ8 722 aa15.97■□□□□ 0.15
ITGB4-207ENST00000580542 SPATA31A1Q5TZJ5 1347 aa15.97■□□□□ 0.15
ITGB4-207ENST00000580542 SNW1Q13573 536 aaKnown RBP15.97■□□□□ 0.15
ITGB4-207ENST00000580542 TMED8Q6PL24 325 aaPredicted RBP15.97■□□□□ 0.15
ITGB4-207ENST00000580542 CEP120Q8N960 986 aa15.97■□□□□ 0.15
ITGB4-207ENST00000580542 USP44Q9H0E7 712 aa15.97■□□□□ 0.15
ITGB4-207ENST00000580542 AOX1Q06278 1338 aa15.97■□□□□ 0.15
ITGB4-207ENST00000580542 IL1RAPL2Q9NP60 686 aa15.96■□□□□ 0.15
ITGB4-207ENST00000580542 SPATA31A6Q5VVP1 1343 aa15.96■□□□□ 0.15
ITGB4-207ENST00000580542 STX6O43752 255 aa15.96■□□□□ 0.15
ITGB4-207ENST00000580542 GSCP56915 257 aaPredicted RBP15.96■□□□□ 0.15
ITGB4-207ENST00000580542 IQUBQ8NA54 791 aa15.96■□□□□ 0.15
ITGB4-207ENST00000580542 CDCA7Q9BWT1 371 aaPredicted RBP15.96■□□□□ 0.15
ITGB4-207ENST00000580542 L2HGDHQ9H9P8 463 aa15.96■□□□□ 0.15
ITGB4-207ENST00000580542 MED4Q9NPJ6 270 aa15.96■□□□□ 0.15
ITGB4-207ENST00000580542 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.96■□□□□ 0.15
ITGB4-207ENST00000580542 F13A1P00488 732 aa15.95■□□□□ 0.14
ITGB4-207ENST00000580542 DNM1Q05193 864 aaKnown RBP15.95■□□□□ 0.14
ITGB4-207ENST00000580542 HSP90AB3PQ58FF7 597 aa15.95■□□□□ 0.14
ITGB4-207ENST00000580542 HDGFL1Q5TGJ6 251 aa15.95■□□□□ 0.14
ITGB4-207ENST00000580542 SYTL4Q96C24 671 aaPredicted RBP15.95■□□□□ 0.14
ITGB4-207ENST00000580542 ORC3Q9UBD5 711 aaPredicted RBP15.95■□□□□ 0.14
ITGB4-207ENST00000580542 GOLIM4O00461 696 aa15.95■□□□□ 0.14
ITGB4-207ENST00000580542 ATP8B1O43520 1251 aa15.95■□□□□ 0.14
ITGB4-207ENST00000580542 SUGP1Q8IWZ8 645 aaKnown RBP15.95■□□□□ 0.14
ITGB4-207ENST00000580542 UBXN6Q9BZV1 441 aa15.95■□□□□ 0.14
ITGB4-207ENST00000580542 SPATA31A5Q5VU36 1347 aa15.95■□□□□ 0.14
ITGB4-207ENST00000580542 SPATA31A7Q8IWB4 1347 aa15.95■□□□□ 0.14
ITGB4-207ENST00000580542 BCL9LQ86UU0 1499 aa15.95■□□□□ 0.14
ITGB4-207ENST00000580542 CCDC69A6NI79 296 aa15.94■□□□□ 0.14
ITGB4-207ENST00000580542 HSP90B1P14625 803 aaKnown RBP15.94■□□□□ 0.14
ITGB4-207ENST00000580542 HSPA4P34932 840 aa15.94■□□□□ 0.14
ITGB4-207ENST00000580542 SWT1Q5T5J6 900 aaKnown RBP15.94■□□□□ 0.14
ITGB4-207ENST00000580542 NUTM1Q86Y26 1132 aa15.94■□□□□ 0.14
ITGB4-207ENST00000580542 SSH3Q8TE77 659 aa15.94■□□□□ 0.14
ITGB4-207ENST00000580542 PSD3Q9NYI0 1048 aa15.94■□□□□ 0.14
ITGB4-207ENST00000580542 SASH3O75995 380 aa15.94■□□□□ 0.14
ITGB4-207ENST00000580542 TNMDQ9H2S6 317 aa15.94■□□□□ 0.14
ITGB4-207ENST00000580542 UBTFL1P0CB47 393 aaPredicted RBP15.93■□□□□ 0.14
ITGB4-207ENST00000580542 SYT1P21579 422 aa15.93■□□□□ 0.14
ITGB4-207ENST00000580542 ZNF165P49910 485 aa15.93■□□□□ 0.14
ITGB4-207ENST00000580542 GRIPAP1Q4V328 841 aa15.93■□□□□ 0.14
ITGB4-207ENST00000580542 MMS22LQ6ZRQ5 1243 aa15.93■□□□□ 0.14
ITGB4-207ENST00000580542 ANKRD65E5RJM6 399 aa15.93■□□□□ 0.14
ITGB4-207ENST00000580542 BARGINQ6ZT62 677 aa15.93■□□□□ 0.14
ITGB4-207ENST00000580542 TDRD7Q8NHU6 1098 aaKnown RBP15.93■□□□□ 0.14
ITGB4-207ENST00000580542 PDRG1Q9NUG6 133 aa15.93■□□□□ 0.14
ITGB4-207ENST00000580542 EPB41L2O43491 1005 aaKnown RBP15.92■□□□□ 0.14
ITGB4-207ENST00000580542 ADAMTS2O95450 1211 aa15.92■□□□□ 0.14
ITGB4-207ENST00000580542 TBC1D8O95759 1140 aa15.92■□□□□ 0.14
ITGB4-207ENST00000580542 MAP4K4O95819 1239 aaPredicted RBP15.92■□□□□ 0.14
ITGB4-207ENST00000580542 CABP4P57796 275 aa15.92■□□□□ 0.14
ITGB4-207ENST00000580542 FNBP4Q8N3X1 1017 aaPredicted RBP15.92■□□□□ 0.14
ITGB4-207ENST00000580542 PI4K2BQ8TCG2 481 aa15.92■□□□□ 0.14
ITGB4-207ENST00000580542 GOLGA6L19H0YKK7 550 aa15.92■□□□□ 0.14
ITGB4-207ENST00000580542 CDC25BP30305 580 aa15.92■□□□□ 0.14
ITGB4-207ENST00000580542 PHAXQ9H814 394 aaKnown RBP15.92■□□□□ 0.14
ITGB4-207ENST00000580542 POLA2Q14181 598 aa15.91■□□□□ 0.14
ITGB4-207ENST00000580542 CCDC93Q567U6 631 aa15.91■□□□□ 0.14
ITGB4-207ENST00000580542 CEP89Q96ST8 783 aa15.91■□□□□ 0.14
ITGB4-207ENST00000580542 DNAJC25Q9H1X3 360 aa15.91■□□□□ 0.14
ITGB4-207ENST00000580542 DBF4Q9UBU7 674 aaPredicted RBP15.91■□□□□ 0.14
ITGB4-207ENST00000580542 DOT1LQ8TEK3 1739 aa15.91■□□□□ 0.14
ITGB4-207ENST00000580542 TTLL5Q6EMB2 1281 aa15.91■□□□□ 0.14
ITGB4-207ENST00000580542 FOXR1Q6PIV2 292 aa15.91■□□□□ 0.14
ITGB4-207ENST00000580542 PPP1R42Q7Z4L9 355 aa15.91■□□□□ 0.14
ITGB4-207ENST00000580542 DNAAF4Q8WXU2 420 aa15.91■□□□□ 0.14
ITGB4-207ENST00000580542 USP16Q9Y5T5 823 aa15.91■□□□□ 0.14
ITGB4-207ENST00000580542 CICQ96RK0 1608 aaPredicted RBP15.91■□□□□ 0.14
ITGB4-207ENST00000580542 THSD7AQ9UPZ6 1657 aa15.9■□□□□ 0.14
ITGB4-207ENST00000580542 CCZ1BP86790 482 aa15.9■□□□□ 0.14
ITGB4-207ENST00000580542 CCZ1P86791 482 aaPredicted RBP15.9■□□□□ 0.14
ITGB4-207ENST00000580542 SLC39A6Q13433 755 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms