RNA–Protein interactions for RNA: ENST00000577664.5

CDK5RAP3-204, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 568 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-204	ENST00000577664	PTPN12	Q05209	780 aa	Known RBP	13.85	□□□□□ -0.19
CDK5RAP3-204	ENST00000577664	CCDC93	Q567U6	631 aa		13.85	□□□□□ -0.19
CDK5RAP3-204	ENST00000577664	C3orf67	Q6ZVT6	689 aa		13.85	□□□□□ -0.19
CDK5RAP3-204	ENST00000577664	DCTPP1	Q9H773	170 aa		13.85	□□□□□ -0.19
CDK5RAP3-204	ENST00000577664	CRAMP1	Q96RY5	1269 aa		13.84	□□□□□ -0.19
CDK5RAP3-204	ENST00000577664	GREM2	Q9H772	168 aa		13.84	□□□□□ -0.19
CDK5RAP3-204	ENST00000577664	CELF2	O95319	508 aa	Known RBP	13.83	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	IGHD	P01880	384 aa		13.83	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	ITGA6	P23229	1130 aa		13.83	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	SCNN1D	P51172	638 aa		13.83	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	IFIT5	Q13325	482 aa	Known RBP	13.83	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	PKN2	Q16513	984 aa	Known RBP	13.83	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	CCDC57	Q2TAC2	916 aa		13.83	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	SMC5	Q8IY18	1101 aa		13.83	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	MASTL	Q96GX5	879 aa		13.83	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.83	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	ANKRD18B	A2A2Z9	1011 aa		13.82	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	NPHP1	O15259	732 aa		13.82	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	CIAO1	O76071	339 aa		13.82	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	NPR1	P16066	1061 aa		13.82	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	RAB11FIP3	O75154	756 aa		13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	BBOX1	O75936	387 aa		13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	LMOD1	P29536	600 aa	Predicted RBP	13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	ALDH1B1	P30837	517 aa		13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	IARS	P41252	1262 aa	Known RBP	13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	EPS15	P42566	896 aa		13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	HSP90AB4P	Q58FF6	505 aa		13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	CCDC24	Q8N4L8	307 aa		13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	CDC5L	Q99459	802 aa	Known RBP	13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	BSDC1	Q9NW68	430 aa	Predicted RBP	13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	RIPOR2	Q9Y4F9	1068 aa		13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	GTF3C3	Q9Y5Q9	886 aa		13.81	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	RPS8	P62241	208 aa	Known RBP	13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	GRAP	Q13588	217 aa		13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	DDX46	Q7L014	1031 aa	Known RBP	13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	TMC4	Q7Z404	712 aa		13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	RTKN2	Q8IZC4	609 aa		13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	SLC17A8	Q8NDX2	589 aa		13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	GRAPL	Q8TC17	118 aa	Predicted RBP	13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	RBM17	Q96I25	401 aa	Known RBP	13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	SEC31B	Q9NQW1	1179 aa		13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	RNF186	Q9NXI6	227 aa		13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	PGAP2	Q9UHJ9	254 aa		13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	SNED1	Q8TER0	1413 aa		13.8	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	FAM155A	B1AL88	458 aa	Predicted RBP	13.79	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	EYA2	O00167	538 aa		13.79	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.79	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	ATG9A	Q7Z3C6	839 aa		13.79	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	CCDC136	Q96JN2	1154 aa		13.79	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	SURF6	O75683	361 aa	Known RBP	13.78	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	IL15	P40933	162 aa	Predicted RBP	13.78	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	LDHAL6A	Q6ZMR3	332 aa		13.78	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	ANKRD18A	Q8IVF6	992 aa		13.78	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	RPGR	Q92834	1020 aa	Known RBP	13.78	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	AKAP11	Q9UKA4	1901 aa		13.78	□□□□□ -0.2
CDK5RAP3-204	ENST00000577664	TRPA1	O75762	1119 aa		13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	SASH1	O94885	1247 aa		13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	IGHMBP2	P38935	993 aa	Known RBP	13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	EIF6	P56537	245 aa	Known RBP	13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	ERC1	Q8IUD2	1116 aa		13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	JDP2	Q8WYK2	163 aa		13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	CELF1	Q92879	486 aa	Known RBP	13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	PSMD1	Q99460	953 aa		13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	PITPNM2	Q9BZ72	1349 aa		13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	GPR108	Q9NPR9	543 aa		13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	PA2G4	Q9UQ80	394 aa	Known RBP	13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	CHMP3	Q9Y3E7	222 aa		13.77	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	COL4A5	P29400	1685 aa		13.76	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	COL6A3	P12111	3177 aa		13.76	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	MROH5	Q6ZUA9	1318 aa		13.76	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	SP8	Q8IXZ3	490 aa		13.76	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	VGLL2	Q8N8G2	317 aa		13.76	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	KLHDC4	Q8TBB5	520 aa		13.76	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	KIF1BP	Q96EK5	621 aa		13.76	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	ZNF594	Q96JF6	807 aa	Predicted RBP	13.76	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.76	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	ZBTB22	O15209	634 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	NUCB1	Q02818	461 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	GRIPAP1	Q4V328	841 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	LRRC24	Q50LG9	513 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	B4GALNT3	Q6L9W6	998 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	RHPN1	Q8TCX5	695 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	MPHOSPH8	Q99549	860 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	PUS3	Q9BZE2	481 aa	Known RBP	13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	ADARB2	Q9NS39	739 aa	Known RBP	13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	PODXL2	Q9NZ53	605 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	MINPP1	Q9UNW1	487 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	COLQ	Q9Y215	455 aa	Predicted RBP	13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	ATP6V0A2	Q9Y487	856 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	GJA3	Q9Y6H8	435 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	TRIOBP	Q9H2D6	2365 aa		13.75	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	PDE8B	O95263	885 aa		13.74	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	HUNK	P57058	714 aa		13.74	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	KIF23	Q02241	960 aa	Predicted RBP	13.74	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	TAF7L	Q5H9L4	462 aa		13.74	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	CC2D2B	Q6DHV5	1058 aa		13.74	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	ZC3H15	Q8WU90	426 aa	Known RBP	13.74	□□□□□ -0.21
CDK5RAP3-204	ENST00000577664	CCDC102A	Q96A19	550 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms