RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 LINS1Q8NG48 757 aa17.46■□□□□ 0.39
CCDC40-216ENST00000576241 IGHMBP2P38935 993 aaKnown RBP17.45■□□□□ 0.38
CCDC40-216ENST00000576241 FXR1P51114 621 aaKnown RBP eCLIP17.45■□□□□ 0.38
CCDC40-216ENST00000576241 ZNF157P51786 506 aaPredicted RBP17.45■□□□□ 0.38
CCDC40-216ENST00000576241 RBM26Q5T8P6 1007 aaKnown RBP17.45■□□□□ 0.38
CCDC40-216ENST00000576241 KRT26Q7Z3Y9 468 aa17.45■□□□□ 0.38
CCDC40-216ENST00000576241 DCPSQ96C86 337 aaKnown RBP17.45■□□□□ 0.38
CCDC40-216ENST00000576241 CSRNP1Q96S65 589 aa17.45■□□□□ 0.38
CCDC40-216ENST00000576241 MINPP1Q9UNW1 487 aa17.45■□□□□ 0.38
CCDC40-216ENST00000576241 PKN2Q16513 984 aaKnown RBP17.44■□□□□ 0.38
CCDC40-216ENST00000576241 KIF4BQ2VIQ3 1234 aa17.44■□□□□ 0.38
CCDC40-216ENST00000576241 PLA2G12BQ9BX93 195 aa17.44■□□□□ 0.38
CCDC40-216ENST00000576241 GBA2Q9HCG7 927 aaPredicted RBP17.44■□□□□ 0.38
CCDC40-216ENST00000576241 EGFRP00533 1210 aa17.43■□□□□ 0.38
CCDC40-216ENST00000576241 RSBN1LQ6PCB5 846 aaPredicted RBP17.43■□□□□ 0.38
CCDC40-216ENST00000576241 PODNQ7Z5L7 613 aa17.43■□□□□ 0.38
CCDC40-216ENST00000576241 AGBL3Q8NEM8 1001 aa17.43■□□□□ 0.38
CCDC40-216ENST00000576241 MED23Q9ULK4 1368 aa17.42■□□□□ 0.38
CCDC40-216ENST00000576241 USP17L3A6NCW0 530 aa17.42■□□□□ 0.38
CCDC40-216ENST00000576241 USP17L4A6NCW7 530 aa17.42■□□□□ 0.38
CCDC40-216ENST00000576241 ITGA6P23229 1130 aa17.42■□□□□ 0.38
CCDC40-216ENST00000576241 CCT4P50991 539 aaKnown RBP17.42■□□□□ 0.38
CCDC40-216ENST00000576241 USP17L1Q7RTZ2 530 aa17.42■□□□□ 0.38
CCDC40-216ENST00000576241 C2orf69Q8N8R5 385 aa17.42■□□□□ 0.38
CCDC40-216ENST00000576241 MPHOSPH8Q99549 860 aa17.42■□□□□ 0.38
CCDC40-216ENST00000576241 POLR2AP24928 1970 aaKnown RBP17.42■□□□□ 0.38
CCDC40-216ENST00000576241 ZNF609O15014 1411 aa17.41■□□□□ 0.38
CCDC40-216ENST00000576241 CASP7P55210 303 aa17.41■□□□□ 0.38
CCDC40-216ENST00000576241 SULF1Q8IWU6 871 aa17.41■□□□□ 0.38
CCDC40-216ENST00000576241 ANKRD2Q9GZV1 360 aa17.41■□□□□ 0.38
CCDC40-216ENST00000576241 SPINK5Q9NQ38 1064 aaPredicted RBP17.41■□□□□ 0.38
CCDC40-216ENST00000576241 GGA3Q9NZ52 723 aa17.41■□□□□ 0.38
CCDC40-216ENST00000576241 HDAC9Q9UKV0 1011 aa17.41■□□□□ 0.38
CCDC40-216ENST00000576241 LEMD3Q9Y2U8 911 aa17.41■□□□□ 0.38
CCDC40-216ENST00000576241 CSF1RP07333 972 aa17.4■□□□□ 0.38
CCDC40-216ENST00000576241 SLC10A3P09131 477 aa17.4■□□□□ 0.38
CCDC40-216ENST00000576241 USP17L8P0C7I0 530 aa17.4■□□□□ 0.38
CCDC40-216ENST00000576241 ZNF280AP59817 542 aaPredicted RBP17.4■□□□□ 0.38
CCDC40-216ENST00000576241 MYH3P11055 1940 aa17.4■□□□□ 0.38
CCDC40-216ENST00000576241 ANKRD18BA2A2Z9 1011 aa17.39■□□□□ 0.37
CCDC40-216ENST00000576241 ADM5C9JUS6 153 aa17.39■□□□□ 0.37
CCDC40-216ENST00000576241 F6X3S4 739 aa17.39■□□□□ 0.37
CCDC40-216ENST00000576241 COA1Q9GZY4 146 aa17.39■□□□□ 0.37
CCDC40-216ENST00000576241 SCN9AQ15858 1988 aa17.39■□□□□ 0.37
CCDC40-216ENST00000576241 WTIPA6NIX2 430 aaPredicted RBP17.38■□□□□ 0.37
CCDC40-216ENST00000576241 KCNJ4P48050 445 aa17.38■□□□□ 0.37
CCDC40-216ENST00000576241 BEND3Q5T5X7 828 aa17.38■□□□□ 0.37
CCDC40-216ENST00000576241 ZNF296Q8WUU4 475 aaPredicted RBP17.38■□□□□ 0.37
CCDC40-216ENST00000576241 FBXW7Q969H0 707 aa17.38■□□□□ 0.37
CCDC40-216ENST00000576241 GMLQ99445 158 aa17.38■□□□□ 0.37
CCDC40-216ENST00000576241 MYOZ2Q9NPC6 264 aa17.38■□□□□ 0.37
CCDC40-216ENST00000576241 CHMP3Q9Y3E7 222 aa17.38■□□□□ 0.37
CCDC40-216ENST00000576241 MKI67P46013 3256 aaKnown RBP17.38■□□□□ 0.37
CCDC40-216ENST00000576241 ZNF804BA4D1E1 1349 aa17.38■□□□□ 0.37
CCDC40-216ENST00000576241 IFIT5Q13325 482 aaKnown RBP17.37■□□□□ 0.37
CCDC40-216ENST00000576241 SCARF1Q14162 830 aa17.37■□□□□ 0.37
CCDC40-216ENST00000576241 OGFOD1Q8N543 542 aa17.37■□□□□ 0.37
CCDC40-216ENST00000576241 SPEF2Q9C093 1822 aa17.36■□□□□ 0.37
CCDC40-216ENST00000576241 DLL1O00548 723 aa17.36■□□□□ 0.37
CCDC40-216ENST00000576241 CHRNDQ07001 517 aa17.36■□□□□ 0.37
CCDC40-216ENST00000576241 STRIP1Q5VSL9 837 aa17.36■□□□□ 0.37
CCDC40-216ENST00000576241 ANGEL2Q5VTE6 544 aaKnown RBP17.36■□□□□ 0.37
CCDC40-216ENST00000576241 FBXO46Q6PJ61 603 aaPredicted RBP17.36■□□□□ 0.37
CCDC40-216ENST00000576241 CACNA1FO60840 1977 aa17.36■□□□□ 0.37
CCDC40-216ENST00000576241 ASTN2O75129 1339 aaPredicted RBP17.36■□□□□ 0.37
CCDC40-216ENST00000576241 MYO3BQ8WXR4 1341 aa17.36■□□□□ 0.37
CCDC40-216ENST00000576241 GRM8O00222 908 aa17.35■□□□□ 0.37
CCDC40-216ENST00000576241 TBC1D8O95759 1140 aa17.35■□□□□ 0.37
CCDC40-216ENST00000576241 DACT2Q5SW24 774 aa17.35■□□□□ 0.37
CCDC40-216ENST00000576241 SLC4A10Q6U841 1118 aa17.35■□□□□ 0.37
CCDC40-216ENST00000576241 TXNRD3Q86VQ6 643 aa17.35■□□□□ 0.37
CCDC40-216ENST00000576241 REM2Q8IYK8 340 aaPredicted RBP17.35■□□□□ 0.37
CCDC40-216ENST00000576241 C9orf78Q9NZ63 289 aaPredicted RBP17.35■□□□□ 0.37
CCDC40-216ENST00000576241 FOXO4P98177 505 aa17.34■□□□□ 0.37
CCDC40-216ENST00000576241 TAF7LQ5H9L4 462 aa17.34■□□□□ 0.37
CCDC40-216ENST00000576241 LMBR1LQ6UX01 489 aa17.34■□□□□ 0.37
CCDC40-216ENST00000576241 RASAL3Q86YV0 1011 aa17.34■□□□□ 0.37
CCDC40-216ENST00000576241 CDCA5Q96FF9 252 aa17.34■□□□□ 0.37
CCDC40-216ENST00000576241 PITPNM2Q9BZ72 1349 aa17.34■□□□□ 0.37
CCDC40-216ENST00000576241 ZNF521Q96K83 1311 aa17.33■□□□□ 0.36
CCDC40-216ENST00000576241 ALDH1L1O75891 902 aa17.33■□□□□ 0.36
CCDC40-216ENST00000576241 KLRK1P26718 216 aa17.33■□□□□ 0.36
CCDC40-216ENST00000576241 CCDC57Q2TAC2 916 aa17.33■□□□□ 0.36
CCDC40-216ENST00000576241 TTLL5Q6EMB2 1281 aa17.33■□□□□ 0.36
CCDC40-216ENST00000576241 SRCIN1Q9C0H9 1055 aa17.33■□□□□ 0.36
CCDC40-216ENST00000576241 PSME4Q14997 1843 aa17.33■□□□□ 0.36
CCDC40-216ENST00000576241 POTEFA5A3E0 1075 aa17.32■□□□□ 0.36
CCDC40-216ENST00000576241 MMP14P50281 582 aa17.32■□□□□ 0.36
CCDC40-216ENST00000576241 MXD3Q9BW11 206 aa17.32■□□□□ 0.36
CCDC40-216ENST00000576241 GTF2IP78347 998 aa17.31■□□□□ 0.36
CCDC40-216ENST00000576241 HELBQ8NG08 1087 aaPredicted RBP17.31■□□□□ 0.36
CCDC40-216ENST00000576241 COLQQ9Y215 455 aaPredicted RBP17.31■□□□□ 0.36
CCDC40-216ENST00000576241 E9PSI1 815 aa17.3■□□□□ 0.36
CCDC40-216ENST00000576241 GPR25O00155 361 aa17.3■□□□□ 0.36
CCDC40-216ENST00000576241 TAF5LO75529 589 aa17.3■□□□□ 0.36
CCDC40-216ENST00000576241 FKBP1BP68106 108 aa17.3■□□□□ 0.36
CCDC40-216ENST00000576241 NBPF9Q3BBW0 867 aa17.3■□□□□ 0.36
CCDC40-216ENST00000576241 EPHA10Q5JZY3 1008 aa17.3■□□□□ 0.36
CCDC40-216ENST00000576241 LDHAL6AQ6ZMR3 332 aa17.3■□□□□ 0.36
CCDC40-216ENST00000576241 ZNF804AQ7Z570 1209 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms