RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	SYAP1	Q96A49	352 aa	Predicted RBP	11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	CAMTA1	Q9Y6Y1	1673 aa		11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	HMGB1	P09429	215 aa	Known RBP	11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	PLCG2	P16885	1265 aa		11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	ZAP70	P43403	619 aa		11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	EIF6	P56537	245 aa	Known RBP	11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	PIBF1	Q8WXW3	757 aa		11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	COL3A1	P02461	1466 aa	Predicted RBP	11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	GTF2I	P78347	998 aa		11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	R3HDM1	Q15032	1099 aa	Known RBP	11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	ISCA1	Q9BUE6	129 aa		11.93	□□□□□ -0.5
SMG6-213	ENST00000573166	PPEF1	O14829	653 aa	Predicted RBP	11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	BCAM	P50895	628 aa		11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	ARHGAP27	Q6ZUM4	889 aa		11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	SPATA5	Q8NB90	893 aa		11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	RBM8A	Q9Y5S9	174 aa	Known RBP	11.92	□□□□□ -0.5
SMG6-213	ENST00000573166		K7ELQ4	463 aa	Predicted RBP	11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	EPHA10	Q5JZY3	1008 aa		11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	ZNF804B	A4D1E1	1349 aa		11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	LMOD1	P29536	600 aa	Predicted RBP	11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	TRIM28	Q13263	835 aa	Known RBP	11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	DOK7	Q18PE1	504 aa		11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	MCM9	Q9NXL9	1143 aa		11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	MYOM1	P52179	1685 aa		11.92	□□□□□ -0.5
SMG6-213	ENST00000573166	CHML	P26374	656 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	UBE4A	Q14139	1066 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	CABP5	Q9NP86	173 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	ADCY9	O60503	1353 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	CARMIL3	Q8ND23	1372 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	MBD4	O95243	580 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	PTMA	P06454	111 aa	Known RBP	11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	PTPN12	Q05209	780 aa	Known RBP	11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	CCDC102B	Q68D86	513 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	EDC3	Q96F86	508 aa	Known RBP	11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	TNS2	Q63HR2	1409 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	XDH	P47989	1333 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	CCDC82	Q8N4S0	544 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	KBTBD3	Q8NAB2	608 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	HMG20B	Q9P0W2	317 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	STX8	Q9UNK0	236 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	KDM6A	O15550	1401 aa	Predicted RBP	11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	CDKL5	O76039	1030 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	NPR1	P16066	1061 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	ATP5J	P18859	108 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	MFSD14B	Q5SR56	506 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	NCOA7	Q8NI08	942 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	NEK1	Q96PY6	1258 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	FEZ1	Q99689	392 aa		11.91	□□□□□ -0.5
SMG6-213	ENST00000573166	NALCN	Q8IZF0	1738 aa		11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	CIAO1	O76071	339 aa		11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	GNAT2	P19087	354 aa		11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	TMC4	Q7Z404	712 aa		11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	CTCFL	Q8NI51	663 aa	Predicted RBP	11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	CAMTA2	O94983	1202 aa		11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	TEX11	Q8IYF3	940 aa		11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	TBC1D22A	Q8WUA7	517 aa		11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	LARP6	Q9BRS8	491 aa	Known RBP	11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	KDM2B	Q8NHM5	1336 aa		11.9	□□□□□ -0.5
SMG6-213	ENST00000573166	CDK11B	P21127	795 aa	Known RBP	11.9	□□□□□ -0.51
SMG6-213	ENST00000573166	GRAP	Q13588	217 aa		11.9	□□□□□ -0.51
SMG6-213	ENST00000573166	SOGA3	Q5TF21	947 aa		11.9	□□□□□ -0.51
SMG6-213	ENST00000573166	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.9	□□□□□ -0.51
SMG6-213	ENST00000573166	TTLL6	Q8N841	843 aa		11.9	□□□□□ -0.51
SMG6-213	ENST00000573166	GRAPL	Q8TC17	118 aa	Predicted RBP	11.9	□□□□□ -0.51
SMG6-213	ENST00000573166	DDX11	Q96FC9	970 aa		11.9	□□□□□ -0.51
SMG6-213	ENST00000573166	DDX49	Q9Y6V7	483 aa	Known RBP	11.9	□□□□□ -0.51
SMG6-213	ENST00000573166	CNTNAP4	Q9C0A0	1308 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	CLSTN1	O94985	981 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	PHKA1	P46020	1223 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	TMEM67	Q5HYA8	995 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	MASTL	Q96GX5	879 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	LEMD3	Q9Y2U8	911 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	SLC12A7	Q9Y666	1083 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	ADORA1	P30542	326 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	CCDC96	Q2M329	555 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	LARP1B	Q659C4	914 aa	Known RBP	11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	TTLL5	Q6EMB2	1281 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	APPBP2	Q92624	585 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	PDIA6	Q15084	440 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	SLC15A2	Q16348	729 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	BICD2	Q8TD16	824 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	TCEANC2	Q96MN5	208 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	AOX1	Q06278	1338 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	CCDC171	Q6TFL3	1326 aa		11.89	□□□□□ -0.51
SMG6-213	ENST00000573166	CCDC83	Q8IWF9	413 aa		11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	SIRT2	Q8IXJ6	389 aa		11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	DBNL	Q9UJU6	430 aa	Known RBP	11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	MAST3	O60307	1309 aa		11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	CCDC196	A0A1B0GTZ2	297 aa		11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	CCDC129	Q6ZRS4	1044 aa		11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	ESR2	Q92731	530 aa		11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	NAP1L5	Q96NT1	182 aa	Predicted RBP	11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	MED1	Q15648	1581 aa	Predicted RBP	11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	INTS5	Q6P9B9	1019 aa	Known RBP	11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	ARMT1	Q9H993	441 aa		11.88	□□□□□ -0.51
SMG6-213	ENST00000573166	DDX11L8	A8MPP1	907 aa		11.87	□□□□□ -0.51
SMG6-213	ENST00000573166	DALRD3	Q5D0E6	543 aa	Known RBP	11.87	□□□□□ -0.51
SMG6-213	ENST00000573166	CATIP	Q7Z7H3	387 aa		11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms